Files in rscherrer/speciomer
Import Speciome Data into R
.Rbuildignore
.github/.gitignore
.github/workflows/check-release.yaml
.gitignore
DESCRIPTION
NAMESPACE
R/add_approx.R
R/add_line.R
R/as_tibble_speciome.R
R/ecotype_colors.R
R/get_locus_data.R
R/get_locus_data_n.R
R/ggsave_all.R
R/index_duplicate.R
R/interpret_variable_names.R
R/plot_barcode.R
R/plot_degrees.R
R/plot_density.R
R/plot_eco_alpha_zoomed.R
R/plot_eco_trait_histogram.R
R/plot_eco_trait_zoomed.R
R/plot_eco_zoomed.R
R/plot_effect_sizes.R
R/plot_full_scan.R
R/plot_full_scan_from_root.R
R/plot_gene_regression.R
R/plot_genome_scan.R
R/plot_loci_tt.R
R/plot_network.R
R/plot_outcome.R
R/plot_outcome_burnin.R
R/plot_outcome_core.R
R/plot_outcome_full.R
R/plot_outcome_init.R
R/plot_outcome_simple.R
R/plot_single_locus.R
R/plot_single_locus_extended.R
R/plot_traits.R
R/plot_traits_from_root.R
R/read_architecture.R
R/read_binary.R
R/read_bitset.R
R/read_edges.R
R/read_individual_genomes.R
R/read_individuals.R
R/read_loci.R
R/read_loci_by_edge.R
R/read_parameters.R
R/read_population.R
R/read_speciome.R
R/read_traits.R
R/recode_traits.R
R/rm_axis.R
R/rm_plural_colnames.R
R/rm_strips.R
R/trait_colors.R
R/trait_names.R
R/trait_numbers.R
R/utils-pipe.R
README.md
docs/FIGURE.md
inst/extdata/sim-example/EI.dat
inst/extdata/sim-example/RI.dat
inst/extdata/sim-example/SI.dat
inst/extdata/sim-example/architecture.txt
inst/extdata/sim-example/edge_corbreed.dat
inst/extdata/sim-example/gmon.out
inst/extdata/sim-example/individual_ecotypes.dat
inst/extdata/sim-example/individual_traits.dat
inst/extdata/sim-example/locus_Cst.dat
inst/extdata/sim-example/locus_Fst.dat
inst/extdata/sim-example/locus_Qst.dat
inst/extdata/sim-example/locus_alpha.dat
inst/extdata/sim-example/locus_freq.dat
inst/extdata/sim-example/parameters.txt
inst/extdata/sim-example/paramlog.txt
inst/extdata/sim-example/population_sizes.dat
inst/extdata/sim-example/time.dat
inst/extdata/sim-example/trait_Cst.dat
inst/extdata/sim-example/trait_Fst.dat
inst/extdata/sim-example/trait_Qst.dat
inst/extdata/sim-example/whattosave.txt
inst/extdata/sim-indiv-genomes/EI.dat
inst/extdata/sim-indiv-genomes/RI.dat
inst/extdata/sim-indiv-genomes/SI.dat
inst/extdata/sim-indiv-genomes/architecture.txt
inst/extdata/sim-indiv-genomes/edge_corbreed.dat
inst/extdata/sim-indiv-genomes/gmon.out
inst/extdata/sim-indiv-genomes/individual_ecotypes.dat
inst/extdata/sim-indiv-genomes/individual_locus_genvalues.dat
inst/extdata/sim-indiv-genomes/individual_traits.dat
inst/extdata/sim-indiv-genomes/individual_whole_genomes.dat
inst/extdata/sim-indiv-genomes/locus_Cst.dat
inst/extdata/sim-indiv-genomes/locus_Fst.dat
inst/extdata/sim-indiv-genomes/locus_Qst.dat
inst/extdata/sim-indiv-genomes/locus_alpha.dat
inst/extdata/sim-indiv-genomes/locus_freq.dat
inst/extdata/sim-indiv-genomes/parameters.txt
inst/extdata/sim-indiv-genomes/paramlog.txt
inst/extdata/sim-indiv-genomes/population_sizes.dat
inst/extdata/sim-indiv-genomes/time.dat
inst/extdata/sim-indiv-genomes/whattosave.txt
man/add_approx.Rd
man/add_line.Rd
man/as_tibble_speciome.Rd
man/ecotype_colors.Rd
man/get_locus_data.Rd
man/get_locus_data_n.Rd
man/ggsave_all.Rd
man/index_duplicate.Rd
man/interpret_variable_names.Rd
man/pipe.Rd
man/plot_barcode.Rd
man/plot_degrees.Rd
man/plot_density.Rd
man/plot_eco_alpha_zoomed.Rd
man/plot_eco_trait_histogram.Rd
man/plot_eco_trait_zoomed.Rd
man/plot_eco_zoomed.Rd
man/plot_effect_sizes.Rd
man/plot_full_scan.Rd
man/plot_full_scan_from_root.Rd
man/plot_gene_regression.Rd
man/plot_genome_scan.Rd
man/plot_loci_tt.Rd
man/plot_network.Rd
man/plot_outcome.Rd
man/plot_outcome_burnin.Rd
man/plot_outcome_core.Rd
man/plot_outcome_full.Rd
man/plot_outcome_init.Rd
man/plot_outcome_simple.Rd
man/plot_single_locus.Rd
man/plot_single_locus_extended.Rd
man/plot_traits.Rd
man/plot_traits_from_root.Rd
man/read_architecture.Rd
man/read_binary.Rd
man/read_bitset.Rd
man/read_edges.Rd
man/read_individual_genomes.Rd
man/read_individuals.Rd
man/read_loci.Rd
man/read_loci_by_edge.Rd
man/read_parameters.Rd
man/read_population.Rd
man/read_speciome.Rd
man/read_traits.Rd
man/recode_traits.Rd
man/rm_axis.Rd
man/rm_plural_colnames.Rd
man/rm_strips.Rd
man/trait_colors.Rd
man/trait_names.Rd
man/trait_numbers.Rd
pics/overview.png
speciomer.Rproj
tests/testthat.R
tests/testthat/test_as_tibble_speciome.R
tests/testthat/test_index_duplicate.R
tests/testthat/test_interpret_variable_names.R
tests/testthat/test_read_architecture.R
tests/testthat/test_read_binary.R
tests/testthat/test_read_bitset.R
tests/testthat/test_read_edges.R
tests/testthat/test_read_individual_genomes.R
tests/testthat/test_read_individuals.R
tests/testthat/test_read_loci.R
tests/testthat/test_read_parameters.R
tests/testthat/test_read_population.R
tests/testthat/test_read_speciome.R
tests/testthat/test_read_traits.R
tests/testthat/test_rm_plural_colnames.R
vignettes/.gitignore
vignettes/vignette.Rmd
