Man pages for rscherrer/speciomer
Import Speciome Data into R
| add_approx | Add deterministic approximation line |
| add_line | Add a line to a ggplot |
| as_tibble_speciome | Turn a data vector into a tibble |
| ecotype_colors | Ecotype colors |
| get_locus_data | Extract data for one locus |
| get_locus_data_n | Extract data for one locus (nested) |
| ggsave_all | Save many ggplots |
| index_duplicate | Duplicate strings with indices |
| interpret_variable_names | Interpret variable names |
| pipe | Pipe operator |
| plot_barcode | Plot encoded traits |
| plot_degrees | Plot locus degrees |
| plot_density | Plot density across loci |
| plot_eco_alpha_zoomed | Plot ecological average mutational effects at different times |
| plot_eco_trait_histogram | Ecological trait histogram |
| plot_eco_trait_zoomed | Plot ecological trait density at different times |
| plot_eco_zoomed | Plot zoomed ecological dynamics |
| plot_effect_sizes | Plot locus effect sizes |
| plot_full_scan | Plot extended genome scan |
| plot_full_scan_from_root | Plot extended genome scan (from root folder) |
| plot_gene_regression | Plot genetic values against genotypes at a certain locus |
| plot_genome_scan | Plot a genome scan |
| plot_loci_tt | Plot locus-specific variables through time |
| plot_network | Plot a gene network |
| plot_outcome | Plot simulation outcome |
| plot_outcome_burnin | Plot the burn-in period |
| plot_outcome_core | Plot simulation outcome |
| plot_outcome_full | Plot a full simulation outcome |
| plot_outcome_init | Plot the first generations |
| plot_outcome_simple | Plot a simplified simulation outcome |
| plot_single_locus | Plot a single locus against the rest of the genome |
| plot_single_locus_extended | Plot a single locus in details |
| plot_traits | Plot individual traits through time |
| plot_traits_from_root | Plot trait densities from root folder |
| read_architecture | Read genetic architecture |
| read_binary | Read a binary file |
| read_bitset | Read a bitset |
| read_edges | Read edge-wise data |
| read_individual_genomes | Read individual whole genome data |
| read_individuals | Read individual-wise data |
| read_loci | Read locus-wise data |
| read_loci_by_edge | Read locus-wise variables on a per-edge basis |
| read_parameters | Read simulation parameters |
| read_population | Read population-wide data |
| read_speciome | Read speciome simulation data |
| read_traits | Read trait-wise data |
| recode_traits | Recode traits |
| rm_axis | Remove an axis from a ggplot |
| rm_plural_colnames | Remove plurals |
| rm_strips | Remove facet strips from a ggplot |
| trait_colors | Trait colors |
| trait_names | Trait names |
| trait_numbers | Trait numbers |
