NWPrimates_data: Dated phylogenetic tree of the New World Primates in nexus...

In rsetienne/DAMOCLES: Dynamic Assembly Model of Colonization, Local Extinction and Speciation

Description

A list with two elements.
. phy is a dated molecular phylogeny for 94 species of New World Primates extracted from the maximum likelihood tree (AUTOsoft dated) of Springer et al. (2012). 1 time unit = 100 million years.
pa is the presence-absence matrix of NW Primates in Manu from Solari et al. (2006). The first column indicate the species tip labels and the second column indicates presence (1) and absence (0).

Format

A list with two elements. The first element (phy) is the primate phylogeny in nexus format. The second element (pa) is the presence-absence matrix with 94 rows and 2 columns.

Source

Solari, S., Pacheco, V., Luna, L., Velazco, P.M. & Patterson, B.D. 2006 Mammals of the manu biosphere reserve. Fieldiana Zoology 110, 13-22.
Springer, M.S., Meredith, R.W., Gatesy, J., Emerling, C.A., Park, J., Rabosky, D.L., Stadler, T., Steiner, C., Ryder, O.A., Janecka, J.E., et al. 2012 Macroevolutionary dynamics and historical biogeography of primate diversification inferred from a species supermatrix. Plos One 7. (doi:ARTN e49521 DOI 10.1371/journal.pone.0049521).

See Also

DAMOCLES_sim, DAMOCLES_ML, DAMOCLES_loglik

rsetienne/DAMOCLES documentation built on Feb. 8, 2021, 1:35 p.m.