Man pages for rsh249/CRACLE
Vegetation distribution modeling and spatial informatics

abiesGlobal distribution of Abies
addplotAdds a single PDF plot to already open plot
and_funP(A | B) = P(A) * P(B)
climondbioclimRaster grid for 19 Bioclimatic Variables from the CLIMOND...
densformGenerate standard probability density functions for each...
dens_objA wrapper for vegdistmod::densform where a multi-taxon...
densplotPlot PDF curve of given type and variable for single density...
distrA sample of species data from one plot
distrgenA sample of genera data from one plot
extractionExtract environmental data
filter_distFilter a set of occurrence data based on the multivariate...
findlocalSearch for likely occurrences
gbif_getDownload distribution data directly from GBIF API
geo_findlocalSearch for likely simulated localities with geographic...
get_bisonDownload distribution data from BISON...
get_dist_allDownload distribution data from BIEN, GBIF, Inaturalist,
get_envirem_climDownload ENVIREM climate data set(s)
get_envirem_elevDownload ENVIREM topographical data set(s)
getextrDownload distribution data, filter, and merge with climate or...
get_optimFind PDF optim(a)um
get_worldclimDownload WorldClim data for modern or paleo models.
heat_upConvert log-likelihoods of any vegdistmod PDF to a raster...
inatDownload distribution data from iNaturalist
MCRA function to estimate climate using the Mutual Climatic...
multiplotPlot PDF curves of given type and variable for density list...
multiv_likelihoodThe multivariate likelihood (log-likelihood) for a given set...
near2Find nearby localities that are likely occurrences given...
neotoma.spDownload distribution data from NEOTOMA
or_funP(A | B) = P(A) + P(B)
plot_climPlot lat/long points on a raster map.
rad_bgGenerate backround data within a radius of occurrence records
write_headfileWrite a companion results file providing site details and...
write_resultsWrite results to file
rsh249/CRACLE documentation built on March 19, 2018, 5:46 p.m.