TCGA_cleanData: TCGA_cleanData

In rshudde/RJclust: RJ Clustering Algorithm

Description

TCGA_cleanData

Usage

TCGA_cleanData(data, threshold = 50)

Arguments

data	Data to preprocess
threshold	Percentage of 0s that will cause a gene (column) to be discarded (default is 50)

Value

Preprocessed data by transposing matrix and removing genes (columns in X matrix) that have a percentage of gene values as 0 over given threshold

Examples

data(OV)
data_preprocessed = TCGA_cleanData(OV, 50)

print(dim(OV))
print(dim(data_preprocessed))

rshudde/RJclust documentation built on Dec. 8, 2019, 4:06 p.m.