tripgen: Generation time calculation function for triplicate data...

In rsteele7/590_final: Bacterial Growth Curve Package

Description

Generation time calculation function for triplicate data series

Usage

tripgen(csv, OD_col1, OD_col2, OD_col3, midlog, time.col = "Time")

Arguments

csv	Filepath to and name of the csv file holding the data.
OD_col1	Column holding first column of optical density data.
OD_col2	Column holding second column of optical density data.
OD_col3	Column holding third column of optical density data.
midlog	For the strain of interest, the typical midlog value.
time.col	Column holding times at which data was collected; default is "Time"

Value

Generation doubling time in the same unit of time as in the data sheet.

Examples

tripgen("sample_data_trip.csv", "OD600_1", "OD600_2", "OD600_3", 0.3)
tripgen("sample_data_trip.csv", "OD600_1", "OD600_2", "OD600_3", 0.6)

rsteele7/590_final documentation built on May 28, 2019, 4:33 a.m.