In rstudio/rticles: Article Formats for R Markdown
Introduction
This template helps you to create a properly formatted \LaTeXe\ manuscript.
Prepare your paper in the same style as used in this sample .pdf file.
Try to avoid excessive use of italics and bold face.
Please do not use any \LaTeXe\ or \TeX\ commands that affect the layout
or formatting of your document (i.e., commands like \verb|\textheight|,
\verb|\textwidth|, etc.).
Section headings
Here are some sub-sections:
A sub-section
Regular text.
A sub-sub-section
Regular text.
Text
Lists
The following is an example of an itemized list, two levels deep.
- This is the first item of an itemized list. Each item
in the list is marked with a "tick." The document
style determines what kind of tick mark is used.
- This is the second item of the list. It contains another
list nested inside it.
- This is the first item of an itemized list that
is nested within the itemized list.
- This is the second item of the inner list. \LaTeX\
allows you to nest lists deeper than you really should.
- This is the third item of the list.
The following is an example of an enumerated list of one level.
\begin{longlist}
\item This is the first item of an enumerated list.
\item This is the second item of an enumerated list.
\end{longlist}
The following is an example of an enumerated list, two levels deep.
\begin{longlist}
\item[1.]
This is the first item of an enumerated list. Each item
in the list is marked with a ``tick.''. The document
style determines what kind of tick mark is used.
\item[2.]
This is the second item of the list. It contains another
list nested inside of it.
\begin{longlist}
\item
This is the first item of an enumerated list that
is nested within.
\item
This is the second item of the inner list. \LaTeX\
allows you to nest lists deeper than you really should.
\end{longlist}
This is the rest of the second item of the outer list.
\item[3.]
This is the third item of the list.
\end{longlist}
Punctuation
Dashes come in three sizes: a hyphen, an intra-word dash like "$U$-statistics" or "the time-homogeneous model";
a medium dash (also called an "en-dash") for number ranges or between two equal entities like "1--2" or "Cauchy--Schwarz inequality";
and a punctuation dash (also called an "em-dash") in place of a comma, semicolon,
colon or parentheses---like this.
Generating an ellipsis \ldots\ with the right spacing
around the periods requires a special command.
Citation
Simple author and year cite: @billingsley2013convergence.
Multiple bibliography items cite: \cite{billingsley2013convergence,bourbaki1966general} or [@billingsley2013convergence; @bourbaki1966general].
Author only cite: \citeauthor{ethier1985markov}.
Year only cite: \citeyear{prokhorov1956convergence} or [-@prokhorov1956convergence].
Fonts
Please use text fonts in text mode, e.g.:
\begin{itemize}
\item[]\textrm{Roman}
\item[]\textit{Italic}
\item[]\textbf{Bold}
\item[]\textsc{Small Caps}
\item[]\textsf{Sans serif}
\item[]\texttt{Typewriter}
\end{itemize}
Please use mathematical fonts in mathematical mode, e.g.:
\begin{itemize}
\item[] $\mathrm{ABCabc123}$
\item[] $\mathit{ABCabc123}$
\item[] $\mathbf{ABCabc123}$
\item[] $\boldsymbol{ABCabc123\alpha\beta\gamma}$
\item[] $\mathcal{ABC}$
\item[] $\mathbb{ABC}$
\item[] $\mathsf{ABCabc123}$
\item[] $\mathtt{ABCabc123}$
\item[] $\mathfrak{ABCabc123}$
\end{itemize}
Note that \verb|\mathcal, \mathbb| belongs to capital letters-only font typefaces.
Notes
Footnotes[^1]
pose no problem.[^2]
[^1]: This is an example of a footnote.
[^2]: Note that footnote number is after punctuation.
Quotations
Text is displayed by indenting it from the left margin. There are short quotations
This is a short quotation. It consists of a
single paragraph of text. There is no paragraph
indentation.
and longer ones.
::: {.quotation data-latex=""}
This is a longer quotation. It consists of two paragraphs
of text. The beginning of each paragraph is indicated
by an extra indentation.
This is the second paragraph of the quotation. It is just
as dull as the first paragraph.
:::
Environments
Examples for plain-style environments
::: {.axiom data-latex=""}
\label{ax1}
This is the body of Axiom \ref{ax1}.
:::
::: {.proof data-latex=""}
This is the body of the proof of the axiom above.
:::
::: {.claim data-latex=""}
\label{cl1}
This is the body of Claim \ref{cl1}. Claim \ref{cl1} is numbered after
Axiom \ref{ax1} because we used \verb|[axiom]| in \verb|\newtheorem|.
:::
::: {.theorem data-latex=""}
\label{th1}
This is the body of Theorem \ref{th1}. Theorem \ref{th1} numbering is
dependent on section because we used \verb|[section]| after \verb|\newtheorem|.
:::
::: {.theorem data-latex="[Title of the theorem]"}
\label{th2}
This is the body of Theorem \ref{th2}. Theorem \ref{th2} has additional title.
:::
::: {.lemma data-latex=""}
\label{le1}
This is the body of Lemma \ref{le1}. Lemma \ref{le1} is numbered after
Theorem \ref{th2} because we used \verb|[theorem]| in \verb|\newtheorem|.
:::
::: {.proof data-latex="[Proof of Lemma \ref{le1}]"}
This is the body of the proof of Lemma \ref{le1}.
:::
Examples for remark-style environments
::: {.definition data-latex=""}
\label{de1}
This is the body of Definition \ref{de1}. Definition \ref{de1} is numbered after
Lemma \ref{le1} because we used \verb|[theorem]| in \verb|\newtheorem|.
:::
::: {.example data-latex=""}
This is the body of the example. Example is unnumbered because we used \verb|\newtheorem*|
instead of \verb|\newtheorem|.
:::
::: {.fact data-latex=""}
This is the body of the fact. Fact is unnumbered because we used \verb|\newtheorem*|
instead of \verb|\newtheorem|.
:::
Tables and figures
Cross-references to labeled tables: As you can see in Table\ref{tab:mtc}
and also in Table\ref{parset}.
knitr::kable(mtcars, caption = "Table caption", format = "latex", vline = "", linesep = "")
\begin{table}
\caption{Sample posterior estimates for each model}
\label{parset}
%
\begin{tabular}{@{}lcrcrrr@{}}
\hline
&& & &\multicolumn{3}{c}{Quantile} \
\cline{5-7}
Model &Parameter &
\multicolumn{1}{c}{Mean} &
Std. dev.&
\multicolumn{1}{c}{2.5\%} &
\multicolumn{1}{c}{50\%}&
\multicolumn{1}{c@{}}{97.5\%} \
\hline
{Model 0} & $\beta_0$ & $-$12.29 & 2.29 & $-$18.04 & $-$11.99 & $-$8.56 \
& $\beta_1$ & 0.10 & 0.07 & $-$0.05 & 0.10 & 0.26 \
& $\beta_2$ & 0.01 & 0.09 & $-$0.22 & 0.02 & 0.16 \[6pt]
{Model 1} & $\beta_0$ & $-$4.58 & 3.04 & $-$11.00 & $-$4.44 & 1.06 \
& $\beta_1$ & 0.79 & 0.21 & 0.38 & 0.78 & 1.20 \
& $\beta_2$ & $-$0.28 & 0.10 & $-$0.48 & $-$0.28 & $-$0.07 \[6pt]
{Model 2} & $\beta_0$ & $-$11.85 & 2.24 & $-$17.34 & $-$11.60 & $-$7.85 \
& $\beta_1$ & 0.73 & 0.21 & 0.32 & 0.73 & 1.16 \
& $\beta_2$ & $-$0.60 & 0.14 & $-$0.88 & $-$0.60 & $-$0.34 \
& $\beta_3$ & 0.22 & 0.17 & $-$0.10 & 0.22 & 0.55 \
\hline
\end{tabular}
%
\end{table}
r"}
plot(1:10)
Sample of cross-reference to figure.
Figure\ref{penG} shows that it is not easy to get something on paper.
Equations and the like
Two equations:
\begin{equation}
C_{s} = K_{M} \frac{\mu/\mu_{x}}{1-\mu/\mu_{x}} \label{ccs}
\end{equation}
and
\begin{equation}
G = \frac{P_{\mathrm{opt}} - P_{\mathrm{ref}}}{P_{\mathrm{ref}}} 100(\%).
\end{equation}
Equation arrays:
\begin{eqnarray}
\frac{dS}{dt} & = & - \sigma X + s_{F} F,\
\frac{dX}{dt} & = & \mu X,\
\frac{dP}{dt} & = & \pi X - k_{h} P,\
\frac{dV}{dt} & = & F.
\end{eqnarray}
One long equation:
\begin{eqnarray}
\mu_{\text{normal}} & = & \mu_{x} \frac{C_{s}}{K_{x}C_{x}+C_{s}} \nonumber\
& = & \mu_{\text{normal}} - Y_{x/s}\bigl(1-H(C_{s})\bigr)(m_{s}+\pi /Y_{p/s})\
& = & \mu_{\text{normal}}/Y_{x/s}+ H(C_{s}) (m_{s}+ \pi /Y_{p/s}).\nonumber
\end{eqnarray}
::: {.appendix data-latex=""}
Title {.unnumbered #appn}
Appendices should be provided in \verb|{appendix}| environment,
before Acknowledgements.
If there is only one appendix,
then please refer to it in text as \ldots\ in the \hyperref[appn]{Appendix}.
:::
::: {.appendix data-latex=""}
Title of the first appendix {#appA}
If there are more than one appendix, then please refer to it
as \ldots\ in Appendix \ref{appA}, Appendix \ref{appB}, etc.
Title of the second appendix {#appB}
First subsection of Appendix \protect\ref{appB}
Use the standard \LaTeX\ commands for headings in \verb|{appendix}|.
Headings and other objects will be numbered automatically.
\begin{equation}
\mathcal{P}=(j_{k,1},j_{k,2},\dots,j_{k,m(k)}). \label{path}
\end{equation}
Sample of cross-reference to the formula (\ref{path}) in Appendix \ref{appB}.
:::
Acknowledgements {.unnumbered}
The authors would like to thank the anonymous referees, an Associate
Editor and the Editor for their constructive comments that improved the
quality of this paper.
The first author was supported by NSF Grant DMS-??-??????.
The second author was supported in part by NIH Grant ???????????.
\begin{supplement}
\stitle{Title of Supplement A}
\sdescription{Short description of Supplement A.}
\end{supplement}
\begin{supplement}
\stitle{Title of Supplement B}
\sdescription{Short description of Supplement B.}
\end{supplement}
rstudio/rticles documentation built on April 9, 2024, 10:51 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Introduction
This template helps you to create a properly formatted \LaTeXe\ manuscript. Prepare your paper in the same style as used in this sample .pdf file. Try to avoid excessive use of italics and bold face. Please do not use any \LaTeXe\ or \TeX\ commands that affect the layout or formatting of your document (i.e., commands like \verb|\textheight|, \verb|\textwidth|, etc.).
Section headings
Here are some sub-sections:
A sub-section
Regular text.
A sub-sub-section
Regular text.
Text
Lists
The following is an example of an itemized list, two levels deep.
- This is the first item of an itemized list. Each item in the list is marked with a "tick." The document style determines what kind of tick mark is used.
- This is the second item of the list. It contains another list nested inside it.
- This is the first item of an itemized list that is nested within the itemized list.
- This is the second item of the inner list. \LaTeX\ allows you to nest lists deeper than you really should.
- This is the third item of the list.
The following is an example of an enumerated list of one level.
\begin{longlist} \item This is the first item of an enumerated list. \item This is the second item of an enumerated list. \end{longlist}
The following is an example of an enumerated list, two levels deep.
\begin{longlist}
\item[1.]
This is the first item of an enumerated list. Each item
in the list is marked with a ``tick.''. The document
style determines what kind of tick mark is used.
\item[2.]
This is the second item of the list. It contains another
list nested inside of it.
\begin{longlist}
\item
This is the first item of an enumerated list that
is nested within.
\item
This is the second item of the inner list. \LaTeX\
allows you to nest lists deeper than you really should.
\end{longlist}
This is the rest of the second item of the outer list.
\item[3.]
This is the third item of the list.
\end{longlist}
Punctuation
Dashes come in three sizes: a hyphen, an intra-word dash like "$U$-statistics" or "the time-homogeneous model"; a medium dash (also called an "en-dash") for number ranges or between two equal entities like "1--2" or "Cauchy--Schwarz inequality"; and a punctuation dash (also called an "em-dash") in place of a comma, semicolon, colon or parentheses---like this.
Generating an ellipsis \ldots\ with the right spacing around the periods requires a special command.
Citation
Simple author and year cite: @billingsley2013convergence. Multiple bibliography items cite: \cite{billingsley2013convergence,bourbaki1966general} or [@billingsley2013convergence; @bourbaki1966general]. Author only cite: \citeauthor{ethier1985markov}. Year only cite: \citeyear{prokhorov1956convergence} or [-@prokhorov1956convergence].
Fonts
Please use text fonts in text mode, e.g.: \begin{itemize} \item[]\textrm{Roman} \item[]\textit{Italic} \item[]\textbf{Bold} \item[]\textsc{Small Caps} \item[]\textsf{Sans serif} \item[]\texttt{Typewriter} \end{itemize} Please use mathematical fonts in mathematical mode, e.g.: \begin{itemize} \item[] $\mathrm{ABCabc123}$ \item[] $\mathit{ABCabc123}$ \item[] $\mathbf{ABCabc123}$ \item[] $\boldsymbol{ABCabc123\alpha\beta\gamma}$ \item[] $\mathcal{ABC}$ \item[] $\mathbb{ABC}$ \item[] $\mathsf{ABCabc123}$ \item[] $\mathtt{ABCabc123}$ \item[] $\mathfrak{ABCabc123}$ \end{itemize} Note that \verb|\mathcal, \mathbb| belongs to capital letters-only font typefaces.
Notes
Footnotes[^1] pose no problem.[^2]
[^1]: This is an example of a footnote. [^2]: Note that footnote number is after punctuation.
Quotations
Text is displayed by indenting it from the left margin. There are short quotations
This is a short quotation. It consists of a single paragraph of text. There is no paragraph indentation.
and longer ones.
::: {.quotation data-latex=""} This is a longer quotation. It consists of two paragraphs of text. The beginning of each paragraph is indicated by an extra indentation.
This is the second paragraph of the quotation. It is just as dull as the first paragraph. :::
Environments
Examples for plain-style environments
::: {.axiom data-latex=""} \label{ax1} This is the body of Axiom \ref{ax1}. :::
::: {.proof data-latex=""} This is the body of the proof of the axiom above. :::
::: {.claim data-latex=""} \label{cl1} This is the body of Claim \ref{cl1}. Claim \ref{cl1} is numbered after Axiom \ref{ax1} because we used \verb|[axiom]| in \verb|\newtheorem|. :::
::: {.theorem data-latex=""} \label{th1} This is the body of Theorem \ref{th1}. Theorem \ref{th1} numbering is dependent on section because we used \verb|[section]| after \verb|\newtheorem|. :::
::: {.theorem data-latex="[Title of the theorem]"} \label{th2} This is the body of Theorem \ref{th2}. Theorem \ref{th2} has additional title. :::
::: {.lemma data-latex=""} \label{le1} This is the body of Lemma \ref{le1}. Lemma \ref{le1} is numbered after Theorem \ref{th2} because we used \verb|[theorem]| in \verb|\newtheorem|. :::
::: {.proof data-latex="[Proof of Lemma \ref{le1}]"} This is the body of the proof of Lemma \ref{le1}. :::
Examples for remark-style environments
::: {.definition data-latex=""} \label{de1} This is the body of Definition \ref{de1}. Definition \ref{de1} is numbered after Lemma \ref{le1} because we used \verb|[theorem]| in \verb|\newtheorem|. :::
::: {.example data-latex=""} This is the body of the example. Example is unnumbered because we used \verb|\newtheorem*| instead of \verb|\newtheorem|. :::
::: {.fact data-latex=""} This is the body of the fact. Fact is unnumbered because we used \verb|\newtheorem*| instead of \verb|\newtheorem|. :::
Tables and figures
Cross-references to labeled tables: As you can see in Table\ref{tab:mtc} and also in Table\ref{parset}.
knitr::kable(mtcars, caption = "Table caption", format = "latex", vline = "", linesep = "")
\begin{table} \caption{Sample posterior estimates for each model} \label{parset} % \begin{tabular}{@{}lcrcrrr@{}} \hline && & &\multicolumn{3}{c}{Quantile} \ \cline{5-7} Model &Parameter & \multicolumn{1}{c}{Mean} & Std. dev.& \multicolumn{1}{c}{2.5\%} & \multicolumn{1}{c}{50\%}& \multicolumn{1}{c@{}}{97.5\%} \ \hline {Model 0} & $\beta_0$ & $-$12.29 & 2.29 & $-$18.04 & $-$11.99 & $-$8.56 \ & $\beta_1$ & 0.10 & 0.07 & $-$0.05 & 0.10 & 0.26 \ & $\beta_2$ & 0.01 & 0.09 & $-$0.22 & 0.02 & 0.16 \[6pt] {Model 1} & $\beta_0$ & $-$4.58 & 3.04 & $-$11.00 & $-$4.44 & 1.06 \ & $\beta_1$ & 0.79 & 0.21 & 0.38 & 0.78 & 1.20 \ & $\beta_2$ & $-$0.28 & 0.10 & $-$0.48 & $-$0.28 & $-$0.07 \[6pt] {Model 2} & $\beta_0$ & $-$11.85 & 2.24 & $-$17.34 & $-$11.60 & $-$7.85 \ & $\beta_1$ & 0.73 & 0.21 & 0.32 & 0.73 & 1.16 \ & $\beta_2$ & $-$0.60 & 0.14 & $-$0.88 & $-$0.60 & $-$0.34 \ & $\beta_3$ & 0.22 & 0.17 & $-$0.10 & 0.22 & 0.55 \ \hline \end{tabular} % \end{table}
r"}
plot(1:10)
Sample of cross-reference to figure. Figure\ref{penG} shows that it is not easy to get something on paper.
Equations and the like
Two equations: \begin{equation} C_{s} = K_{M} \frac{\mu/\mu_{x}}{1-\mu/\mu_{x}} \label{ccs} \end{equation} and \begin{equation} G = \frac{P_{\mathrm{opt}} - P_{\mathrm{ref}}}{P_{\mathrm{ref}}} 100(\%). \end{equation}
Equation arrays: \begin{eqnarray} \frac{dS}{dt} & = & - \sigma X + s_{F} F,\ \frac{dX}{dt} & = & \mu X,\ \frac{dP}{dt} & = & \pi X - k_{h} P,\ \frac{dV}{dt} & = & F. \end{eqnarray} One long equation: \begin{eqnarray} \mu_{\text{normal}} & = & \mu_{x} \frac{C_{s}}{K_{x}C_{x}+C_{s}} \nonumber\ & = & \mu_{\text{normal}} - Y_{x/s}\bigl(1-H(C_{s})\bigr)(m_{s}+\pi /Y_{p/s})\ & = & \mu_{\text{normal}}/Y_{x/s}+ H(C_{s}) (m_{s}+ \pi /Y_{p/s}).\nonumber \end{eqnarray}
::: {.appendix data-latex=""}
Title {.unnumbered #appn}
Appendices should be provided in \verb|{appendix}| environment, before Acknowledgements.
If there is only one appendix, then please refer to it in text as \ldots\ in the \hyperref[appn]{Appendix}. :::
::: {.appendix data-latex=""}
Title of the first appendix {#appA}
If there are more than one appendix, then please refer to it as \ldots\ in Appendix \ref{appA}, Appendix \ref{appB}, etc.
Title of the second appendix {#appB}
First subsection of Appendix \protect\ref{appB}
Use the standard \LaTeX\ commands for headings in \verb|{appendix}|. Headings and other objects will be numbered automatically.
\begin{equation} \mathcal{P}=(j_{k,1},j_{k,2},\dots,j_{k,m(k)}). \label{path} \end{equation}
Sample of cross-reference to the formula (\ref{path}) in Appendix \ref{appB}. :::
Acknowledgements {.unnumbered}
The authors would like to thank the anonymous referees, an Associate Editor and the Editor for their constructive comments that improved the quality of this paper.
The first author was supported by NSF Grant DMS-??-??????.
The second author was supported in part by NIH Grant ???????????.
\begin{supplement} \stitle{Title of Supplement A} \sdescription{Short description of Supplement A.} \end{supplement} \begin{supplement} \stitle{Title of Supplement B} \sdescription{Short description of Supplement B.} \end{supplement}
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