Man pages for ruggleslab/blackSheepR
Outlier Analysis for pairwise differential comparison
| annotationlist_builder | Create the annotation object for plotting in a heatmap |
| comparison_groupings | Create all of the groups based on the input metadata |
| count_outliers | Count up the outlier information for each of the groups you... |
| create_heatmap | Plot out a heatmap |
| deva | Run the entire blacksheep Function from Start to finish |
| deva_normalization | Normalization of data to prepare for deva. Uses a Median of... |
| deva_results | Utility function that allows easier grabbing of data |
| make_comparison_columns | Utility function that will take in columns with several... |
| make_outlier_table | Separate out the "i"th gene, take the bounds, and then create... |
| outlier_analysis | With the grouptablist generated by count_outliers - run... |
| outlier_heatmap | With the grouptablist generated by count_outliers - run... |
| sample_annotationdata | sample_annotationdata |
| sample_phosphodata | sample_phosphodata |
| sample_rnadata | sample_rnadata |
