sample_phosphodata: sample_phosphodata

In ruggleslab/blackSheepR: Outlier Analysis for pairwise differential comparison

sample_phosphodata

Description

Example phosphoprotein data for Outlier analysis This example data is a subset of the data used in the CPTAC3 Breast Cancer exploration study: (doi: 10.1038/nature18003). Each row corresponds to a phosphoprotein site, and each column is a sample. The values within the table are normalized massspec phosphoprotein values.

Usage

sample_phosphodata

Format

A data frame with 15532 rows and 76 variables:

TCGA-A2-A0CM

phosphoprotein levels for each gene

TCGA-A2-A0D2

phosphoprotein levels for each gene

TCGA-A2-A0EQ

phosphoprotein levels for each gene

TCGA-A2-A0EV

phosphoprotein levels for each gene

TCGA-A2-A0EX

phosphoprotein levels for each gene

TCGA-A2-A0EY

phosphoprotein levels for each gene

TCGA-A2-A0SW

phosphoprotein levels for each gene

TCGA-A2-A0SX

phosphoprotein levels for each gene

TCGA-A2-A0T3

phosphoprotein levels for each gene

TCGA-A2-A0T6

phosphoprotein levels for each gene

TCGA-A2-A0YC

phosphoprotein levels for each gene

TCGA-A2-A0YD

phosphoprotein levels for each gene

TCGA-A2-A0YF

phosphoprotein levels for each gene

TCGA-A2-A0YG

phosphoprotein levels for each gene

TCGA-A2-A0YM

phosphoprotein levels for each gene

TCGA-A7-A0CE

phosphoprotein levels for each gene

TCGA-A7-A0CJ

phosphoprotein levels for each gene

TCGA-A7-A13F

phosphoprotein levels for each gene

TCGA-A8-A06N

phosphoprotein levels for each gene

TCGA-A8-A06Z

phosphoprotein levels for each gene

TCGA-A8-A076

phosphoprotein levels for each gene

TCGA-A8-A079

phosphoprotein levels for each gene

TCGA-A8-A08Z

phosphoprotein levels for each gene

TCGA-A8-A09G

phosphoprotein levels for each gene

TCGA-AN-A04A

phosphoprotein levels for each gene

TCGA-AN-A0AJ

phosphoprotein levels for each gene

TCGA-AN-A0AL

phosphoprotein levels for each gene

TCGA-AN-A0AM

phosphoprotein levels for each gene

TCGA-AN-A0FK

phosphoprotein levels for each gene

TCGA-AN-A0FL

phosphoprotein levels for each gene

TCGA-AO-A03O

phosphoprotein levels for each gene

TCGA-AO-A0J6

phosphoprotein levels for each gene

TCGA-AO-A0J9

phosphoprotein levels for each gene

TCGA-AO-A0JC

phosphoprotein levels for each gene

TCGA-AO-A0JE

phosphoprotein levels for each gene

TCGA-AO-A0JJ

phosphoprotein levels for each gene

TCGA-AO-A0JL

phosphoprotein levels for each gene

TCGA-AO-A0JM

phosphoprotein levels for each gene

TCGA-AO-A126

phosphoprotein levels for each gene

TCGA-AO-A12B

phosphoprotein levels for each gene

TCGA-AO-A12D

phosphoprotein levels for each gene

TCGA-AO-A12E

phosphoprotein levels for each gene

TCGA-AO-A12F

phosphoprotein levels for each gene

TCGA-AR-A0TR

phosphoprotein levels for each gene

TCGA-AR-A0TT

phosphoprotein levels for each gene

TCGA-AR-A0TV

phosphoprotein levels for each gene

TCGA-AR-A0TX

phosphoprotein levels for each gene

TCGA-AR-A0U4

phosphoprotein levels for each gene

TCGA-AR-A1AP

phosphoprotein levels for each gene

TCGA-AR-A1AS

phosphoprotein levels for each gene

TCGA-AR-A1AV

phosphoprotein levels for each gene

TCGA-AR-A1AW

phosphoprotein levels for each gene

TCGA-BH-A0AV

phosphoprotein levels for each gene

TCGA-BH-A0BV

phosphoprotein levels for each gene

TCGA-BH-A0C1

phosphoprotein levels for each gene

TCGA-BH-A0C7

phosphoprotein levels for each gene

TCGA-BH-A0DD

phosphoprotein levels for each gene

TCGA-BH-A0DG

phosphoprotein levels for each gene

TCGA-BH-A0E1

phosphoprotein levels for each gene

TCGA-BH-A0E9

phosphoprotein levels for each gene

TCGA-BH-A18N

phosphoprotein levels for each gene

TCGA-BH-A18Q

phosphoprotein levels for each gene

TCGA-BH-A18U

phosphoprotein levels for each gene

TCGA-C8-A12L

phosphoprotein levels for each gene

TCGA-C8-A12T

phosphoprotein levels for each gene

TCGA-C8-A12U

phosphoprotein levels for each gene

TCGA-C8-A12V

phosphoprotein levels for each gene

TCGA-C8-A12Z

phosphoprotein levels for each gene

TCGA-C8-A130

phosphoprotein levels for each gene

TCGA-C8-A131

phosphoprotein levels for each gene

TCGA-C8-A134

phosphoprotein levels for each gene

TCGA-C8-A135

phosphoprotein levels for each gene

TCGA-C8-A138

phosphoprotein levels for each gene

TCGA-D8-A142

phosphoprotein levels for each gene

TCGA-E2-A154

phosphoprotein levels for each gene

TCGA-E2-A158

phosphoprotein levels for each gene

Source

https://cptac-data-portal.georgetown.edu/cptac/s/S029

ruggleslab/blackSheepR documentation built on Feb. 27, 2023, 10:39 p.m.