sSimulator: Generate simulation data of single cell RNA;

In ruibinxx/scRMD: scRMD: Imputation for single cell RNA-seq data via robust matrix decomposition

Description

Generate simulation data of single cell RNA;

Usage

sSimulator(K, Kn, Ndiff, Nsame, logMean, logSd, ZeroRate, drbase, dr,
  sigmahomo, sigmahetero, type = "cluster")

Arguments

K	number of clusters;
Kn	number of cells in each cluster;
Ndiff	number of genes are differential exprerssed;
Nsame	number of genes have same expression;
logMean	the log mean of gene expression;
logSd	the log standard deviation of gene expression;
ZeroRate	the rate of true zero expression;
dr	the parameter of drop out probability;
sigmahomo	the homo variance of noise;
sigmahetero	the hetero variance of noise;
type	data generate for clustering analysis or differential analysis;

Author(s)

Chong Chen, [e-mail]

ruibinxx/scRMD documentation built on Feb. 21, 2020, 4:41 p.m.