sSimulator: Generate simulation data of single cell RNA;

Description Usage Arguments Author(s)

View source: R/sSimulator.R

Description

Generate simulation data of single cell RNA;

Usage

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sSimulator(K, Kn, Ndiff, Nsame, logMean, logSd, ZeroRate, drbase, dr,
  sigmahomo, sigmahetero, type = "cluster")

Arguments

K

number of clusters;

Kn

number of cells in each cluster;

Ndiff

number of genes are differential exprerssed;

Nsame

number of genes have same expression;

logMean

the log mean of gene expression;

logSd

the log standard deviation of gene expression;

ZeroRate

the rate of true zero expression;

dr

the parameter of drop out probability;

sigmahomo

the homo variance of noise;

sigmahetero

the hetero variance of noise;

type

data generate for clustering analysis or differential analysis;

Author(s)

Chong Chen, cheung1990@126.com


ruibinxx/scRMD documentation built on Feb. 21, 2020, 4:41 p.m.