evaluate_gene_levels: Compare Raspberry gene-level results against other tools.
In ruolin/raspberry: Differential spliced transcripts analysis based on multinomial logistic regression
Description
Usage
Arguments
Value
Examples
Description
Compare Raspberry gene-level results against other tools.
Usage
1
evaluate_gene_levels(raspberry_result, truth_file, ...)
Arguments
raspberry_result
the results from run_analysis.
truth_file
A file contains differential spliced gene id. One at each line.
...
Other programs output as a key value pari, separated by comma. The keys are program names, which have to be from the following (CUffdiff2, DEXSeq, DSGseq. currently supported). The values are file path to the program output.
Value
A path the ROC curve pdf.
Examples
1
2
3
4
evaluate_gene_levels(raspberry$result, truth_file = "inst/extdata/trueASgenes.txt",
Cuffdiff2 = "inst/extdata/splicing.diff",
DEXSeq = "inst/extdata/dexseq.txt",
DSGseq = "inst/extdata/DSGresult.txt")
ruolin/raspberry documentation built on Jan. 1, 2020, 8:39 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Compare Raspberry gene-level results against other tools.
Usage
1 | evaluate_gene_levels(raspberry_result, truth_file, ...)
|
Arguments
raspberry_result |
the results from run_analysis. |
truth_file |
A file contains differential spliced gene id. One at each line. |
... |
Other programs output as a key value pari, separated by comma. The keys are program names, which have to be from the following (CUffdiff2, DEXSeq, DSGseq. currently supported). The values are file path to the program output. |
Value
A path the ROC curve pdf.
Examples
1 2 3 4 | evaluate_gene_levels(raspberry$result, truth_file = "inst/extdata/trueASgenes.txt",
Cuffdiff2 = "inst/extdata/splicing.diff",
DEXSeq = "inst/extdata/dexseq.txt",
DSGseq = "inst/extdata/DSGresult.txt")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.