map_to_ensembl_homologues_with_biomart: map_to_ensembl_homologues_with_biomart
In russHyde/homologiser: Map Genes To Their Homologues In A Different Species

Description Usage Arguments Value

View source: R/homologue_functions.R

A function to map from a set of 'gene_ids' in one species (sp1) to the ensembl-gene id of their homologues in a separate species (sp2). The mappings are performed using biomart databases.

1 2	map_to_ensembl_homologues_with_biomart(gene_ids = character(0), dataset_sp1 = NULL, sp2 = "mmusculus", idtype_sp1 = "ensembl_gene_id")

`gene_ids`	A vector of gene identifiers for species 'sp1' and of type 'idtype_sp1'.
`dataset_sp1`	The 'biomaRt' dataset that houses the data for species 'sp1'.
`sp2`	The name of species 2 (using ensembl prefixes like 'hsapiens' / 'mmusculus').
`idtype_sp1`	The type of identifier used for species 'sp1'; this should match one of the field / column names in the biomaRt dataset for species 'sp1'.