Files in ruthkr/deepredeff
Deep Learning Prediction of Effectors
.Rbuildignore
.covrignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/deepredeff.R
R/encoding_methods.R
R/ensemble_methods.R
R/input_to_df.R
R/install.R
R/load_model.R
R/prediction.R
R/prediction_helper.R
R/sysdata.rda
R/tbl_deepredeff.R
R/utils-pipe.R
R/utils.R
README.Rmd
README.md
_pkgdown.yml
codecov.yml
cran-comments.md
data-raw/bacteria_cnn_gru.csv
data-raw/bacteria_cnn_lstm.csv
data-raw/bacteria_gru_emb.csv
data-raw/bacteria_lstm_emb.csv
data-raw/model_weights.R
deepredeff.Rproj
inst/extdata/example/bacteria_sample.fasta
inst/extdata/example/fungi_sample.fasta
inst/extdata/example/oomycete_sample.fasta
inst/extdata/weights/all_cnn_gru.hdf5
inst/extdata/weights/all_cnn_lstm.hdf5
inst/extdata/weights/all_gru_emb.hdf5
inst/extdata/weights/all_lstm_emb.hdf5
inst/extdata/weights/bacteria_cnn_gru.hdf5
inst/extdata/weights/bacteria_cnn_lstm.hdf5
inst/extdata/weights/bacteria_gru_emb.hdf5
inst/extdata/weights/bacteria_lstm_emb.hdf5
inst/extdata/weights/fungi_cnn_lstm.hdf5
inst/extdata/weights/oomycete_cnn_lstm.hdf5
man/aas_to_df.Rd
man/aasset_to_df.Rd
man/deepredeff.Rd
man/encode_integer.Rd
man/encode_one_hot.Rd
man/ensemble_weighted.Rd
man/fasta_to_df.Rd
man/figures/README-pred_result_plot-1.png
man/figures/logo.png
man/get_ensemble_method.Rd
man/install_tensorflow.Rd
man/load_model.Rd
man/package_glob.Rd
man/pipe.Rd
man/plot.tbl_deepredeff.Rd
man/predict_effector.Rd
man/prediction_mapper.Rd
man/summary.tbl_deepredeff.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/testthat.R
tests/testthat/test-encoding.R
tests/testthat/test-ensemble_methods.R
tests/testthat/test-prediction.R
tests/testthat/test-transform_input.R
vignettes/.gitignore
vignettes/overview.Rmd
vignettes/predict.Rmd
