BatchCorrMetabolomics-package: Batch correlation for untargeted MS-based metabolomics data.

In rwehrens/BatchCorrMetabolomics: Complementary package to "Improved Batch Correction in Untargeted MS-Based Metabolomics"

Description

Compendium to the paper "Improved batch correlation for untargeted MS-based metabolomics data" by Wehrens et al. (2016). All data are provided, as well as functions to reproduce the results in that paper. A demo R scripts is included that does this: simply type demo("BC", echo = FALSE) at the R prompt after loading the package.

Details

The basic function in the package is doBC which does batch correction for one variable, given batch and measurement order information. Evaluation of batch correction for a number of variables simultaneously is available through evaluateCorrection.

Author(s)

Ron Wehrens [aut, cre] (author), Roland Mumm [ctb], Joost Keurentjes [ctb], Ric. de Vos [ctb] (contribution of data sets)

Maintainer: Ron Wehrens <[e-mail]>

References

"@ArticleWehrens2016, author = Ron Wehrens and Jos.~A.~Hageman and Fred~van~Eeuwijk and Rik~Kooke and P\'adraic~J.~Flood and Erik Wijnker and Joost~J.B.~Keurentjes and Arjen~Lommen and Henri\"ette~D.L.M.~van~Eekelen and Robert~D.~Hall and Roland~Mumm and Ric~C.H.~de~Vos, title = Improved batch correction in untargeted MS-based metabolomics, journal = Metabolomics, year = 2016, volume = 12, DOI = 10.1007/s11306-016-1015-8, pages = 1–12

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See Also

doBC, evaluateCorrection

rwehrens/BatchCorrMetabolomics documentation built on May 28, 2019, 10:42 a.m.