LCDBtest: Sample DB for LC-MS annotation
In rwehrens/metaMS: MS-based metabolomics annotation pipeline
LCDBtest R Documentation
Sample DB for LC-MS annotation
Description
This database has been generated using the exptable dataset to
process the data included in the metaMSdata package.
Usage
data(LCDBtest)
Format
LCDBtest is a list with three elements:
- Reftable
The initial table used to generate the DB.
- Info
Some info on the DB: date of creation, and settings used.
- DB
A data.frame containing the actual information. See the
details section.
Details
The DB data.frame contains the following fields:
- ChemSpiderID
The Chem spider identifier for the compound.
- compound
A human-readable name for the compound.
- adduct
The output of the CAMERA annotation of the standard file.
- isotopes
The output of the CAMERA annotation of the standard file.
- mz, rt
the mz and rt values.
- maxo
the maxo intensity value for a given feature in
the injection.
- validated
a string which defines the origin of a specific feature.
Author(s)
Pietro Franceschi
See Also
createSTDdbLC, exptable,
FEMsettings
rwehrens/metaMS documentation built on Feb. 27, 2023, 5:13 a.m.
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| LCDBtest | R Documentation |
Sample DB for LC-MS annotation
Description
This database has been generated using the exptable dataset to
process the data included in the metaMSdata package.
Usage
data(LCDBtest)
Format
LCDBtest is a list with three elements:
- Reftable
The initial table used to generate the DB.
- Info
Some info on the DB: date of creation, and settings used.
- DB
A
data.framecontaining the actual information. See the details section.
Details
The DB data.frame contains the following fields:
- ChemSpiderID
The Chem spider identifier for the compound.
- compound
A human-readable name for the compound.
- adduct
The output of the CAMERA annotation of the standard file.
- isotopes
The output of the CAMERA annotation of the standard file.
- mz, rt
the mz and rt values.
- maxo
the
maxointensity value for a given feature in the injection.- validated
a string which defines the origin of a specific feature.
Author(s)
Pietro Franceschi
See Also
createSTDdbLC, exptable,
FEMsettings
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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