API for rworkflow/Rcwl
An R interface to the Common Workflow Language
| Global functions | |
|---|---|
| $,cwlProcess-method | Man page |
| $<-,cwlProcess-method | Man page |
| +,cwlWorkflow,cwlStep-method | Man page |
| .DollarNames.cwlProcess | Source code |
| .assignInput | Source code |
| .cwl2yml | Source code |
| .inputUI | Source code |
| .readInputs | Source code |
| .readOutputs | Source code |
| .readSteps | Source code |
| .removeEmpty | Source code |
| .rmDList | Source code |
| .rmDocker | Source code |
| .slot2list | Source code |
| CondaTool | Man page Source code |
| Dirent | Man page Source code |
| InputArrayParam | Man page Source code |
| InputArrayParam-class | Man page |
| InputParam | Man page Source code |
| InputParam-class | Man page |
| InputParamList | Man page Source code |
| InputParamList-class | Man page |
| OutputArrayParam | Man page Source code |
| OutputArrayParam-class | Man page |
| OutputParam | Man page Source code |
| OutputParam-class | Man page |
| OutputParamList | Man page Source code |
| OutputParamList-class | Man page |
| Rcwl | Man page |
| Rcwl,Rcwl-package | Man page |
| Rcwl-package | Man page |
| ShellScript | Man page Source code |
| addMeta | Man page Source code |
| allRun | Source code |
| arguments | Man page Source code |
| arguments<- | Man page |
| as.listInputs | Source code |
| as.listOutputs | Source code |
| as.listSteps | Source code |
| baseCommand | Man page Source code |
| baseCommand<- | Man page |
| condaPackage | Man page Source code |
| cwl-requirements | Man page |
| cwlClass | Man page Source code |
| cwlClass<- | Man page |
| cwlProcess | Man page Source code |
| cwlProcess-class | Man page |
| cwlProcess-methods | Man page |
| cwlShiny | Man page Source code |
| cwlStep | Man page Source code |
| cwlStep-class | Man page |
| cwlStepList | Man page Source code |
| cwlStepList-class | Man page |
| cwlToList | Source code |
| cwlVersion | Man page Source code |
| cwlVersion<- | Man page |
| cwlWorkflow | Man page Source code |
| cwlWorkflow-class | Man page |
| cwlWorkflow-methods | Man page |
| env_Rcwl | Man page |
| extensions | Man page Source code |
| extensions<- | Man page |
| hints | Man page Source code |
| hints<- | Man page |
| inputs | Man page Source code |
| install_cwltool | Man page Source code |
| install_udocker | Man page Source code |
| meta | Man page Source code |
| meta<- | Man page |
| outputs | Man page Source code |
| plotCWL | Man page Source code |
| plotGraph | Source code |
| plotMermaid | Source code |
| readCWL | Man page Source code |
| requireDocker | Man page Source code |
| requireEnvVar | Man page Source code |
| requireInitialWorkDir | Man page Source code |
| requireJS | Man page Source code |
| requireManifest | Man page Source code |
| requireMultipleInput | Man page Source code |
| requireNetwork | Man page Source code |
| requireResource | Man page Source code |
| requireRscript | Man page Source code |
| requireScatter | Man page Source code |
| requireShellCommand | Man page Source code |
| requireShellScript | Man page Source code |
| requireSoftware | Man page Source code |
| requireStepInputExpression | Man page Source code |
| requireSubworkflow | Man page Source code |
| requirements | Man page Source code |
| requirements<- | Man page |
| runCWL | Man page Source code |
| runCWLBP | Man page Source code |
| runCWLBatch | Man page Source code |
| runFun | Source code |
| runs | Man page Source code |
| short | Man page Source code |
| stdOut | Man page Source code |
| stdOut<- | Man page |
| stepInParam | Man page Source code |
| stepInParam-class | Man page |
| stepInParamList | Man page Source code |
| stepInParamList-class | Man page |
| stepInputs | Source code |
| stepOutputs | Source code |
| steps | Man page Source code |
| steps<- | Man page |
| writeCWL | Man page Source code |
| writeFun | Source code |
