cwlSearch: cwlSearch

In rworkflow/RcwlPipelines: Bioinformatics pipelines based on Rcwl

cwlSearch

Description

Function to search Rcwl tools and pipelines.

Usage

cwlSearch(keyword, bfc = NULL, type = NULL, ...)

Arguments

keyword	A (vector of) character string as keywords to search for tools or pipelines. Will be used to match patterns (case-insensitive) against 'rname', 'rpath', 'fpath', 'Command' and 'Container' column in the 'bfc' object.
bfc	The 'BiocFileCache' object for the recipes returned from 'cwlUpdate'. The default is NULL which automatically detect the "Rcwl" cache directory.
type	The 'Type' to filter the results, "pipeline" or "tool".
...	More options from the internal 'bfcquery' function.

Value

A BiocFileCache tibble.

Examples

## Not run: 
tls <- cwlSearch(c("bwa", "mem"))
data.frame(tls)

## End(Not run)

rworkflow/RcwlPipelines documentation built on Nov. 18, 2023, 8:51 p.m.