API for sa-lee/sneezy
Interactively explore non-linear projections like t-SNE

Global functions
.arg_check_le	Source code
.check_shiny	Source code
.create_mesh	Source code
.expand_by_edges	Source code
.gif_tour	Source code
.graph_op	Source code
.norm_args_sneezy	Source code
.rescale	Source code
.retrieve_mat	Source code
.set_basis	Source code
.setup_plan	Source code
.te	Source code
.tour_path	Source code
.tsne_generator	Source code
.valid_te	Source code
NonLinearEmbeddingMatrix	Man page Source code
NonLinearEmbeddingMatrix-class	Man page
NonLinearEmbeddingParam-class	Man page
TourExperiment	Man page
TourExperiment,SingleCellExperiment-method	Man page
TourExperiment,SummarizedExperiment-method	Man page
TourExperiment,data.frame-method	Man page
TourExperiment,matrix-method	Man page
TourExperiment-class	Man page
add_segments	Source code
align-embedding	Man page
align_embedding	Man page Source code
basisSet	Man page
basisSet,TourExperiment,character-method	Man page
basisSet,TourExperiment,missing-method	Man page
basisSet,TourExperiment,numeric-method	Man page
basisSet<-	Man page
basisSet<-,TourExperiment,character-method	Man page
basisSet<-,TourExperiment,missing-method	Man page
basisSet<-,TourExperiment,numeric-method	Man page
basisSetNames	Man page
basisSetNames,TourExperiment-method	Man page
basisSetNames<-	Man page
basisSetNames<-,TourExperiment-method	Man page
basisSets	Man page
basisSets,TourExperiment-method	Man page
basisSets<-	Man page
basisSets<-,TourExperiment-method	Man page
centroids_by_groups	Source code
centroids_by_groups_mat	Source code
compute_flat_dist	Source code
compute_half_range	Man page
compute_half_range,ANY-method	Man page
compute_half_range,LinearEmbeddingMatrix-method	Man page
embed_linear	Man page
embed_linear,BiocSingularParam-method	Man page
embed_linear,missing-method	Man page
embed_nonlinear	Man page
estimate_kmeans	Source code
estimate_knn_centroids	Source code
estimate_neighbors	Man page Source code
estimate_snn_centroids	Source code
flatten_array	Source code
flatten_graph	Source code
fproj_dist	Source code
generate_bases	Man page
generate_bases,ANY-method	Man page
generate_bases,LinearEmbeddingMatrix-method	Man page
generate_bases,TourExperiment-method	Man page
generate_sphere	Man page Source code
is_arrayish	Source code
link_left	Man page Source code
link_right	Source code
multi	Man page
neighborSet	Man page
neighborSet,TourExperiment,character-method	Man page
neighborSet,TourExperiment,missing-method	Man page
neighborSet,TourExperiment,numeric-method	Man page
neighborSet<-	Man page
neighborSet<-,TourExperiment,character-method	Man page
neighborSet<-,TourExperiment,missing-method	Man page
neighborSet<-,TourExperiment,numeric-method	Man page
neighborSetNames	Man page
neighborSetNames,TourExperiment-method	Man page
neighborSetNames<-	Man page
neighborSetNames<-,TourExperiment-method	Man page
neighborSets	Man page
neighborSets,TourExperiment-method	Man page
neighborSets<-	Man page
neighborSets<-,TourExperiment-method	Man page
nleArgs	Man page
nleArgs,NonLinearEmbeddingParam-method	Man page
overlay-centroids	Man page
overlay-neighbors	Man page
overlay-neighbors-diff	Man page
overlay_difference_neighbors	Man page Source code
overlay_difference_shared_neighbors	Man page Source code
overlay_intersect_neighbors	Man page Source code
overlay_intersect_shared_neighbors	Man page Source code
overlay_kmeans_centroids	Man page Source code
overlay_knn_centroids	Man page Source code
overlay_neighbors	Man page Source code
overlay_shared_neighbors	Man page Source code
overlay_snn_centroids	Man page Source code
pca_exact	Man page
pca_irlba	Man page
pca_random	Man page
pdfsense	Man page
rotate_embedding	Man page Source code
show,NonLinearEmbeddingParam-method	Man page
show,TourExperiment-method	Man page
sneezy_centroids	Man page Source code
sneezy_neighbors	Man page Source code
sneezy_shep	Source code
sneezy_tour	Man page Source code
tnseNeighborsParam-class	Man page
tsneParam-class	Man page
tsne_approx	Man page Source code
tsne_exact	Man page Source code
view_tour_xy	Man page
view_tour_xy,TourExperiment-method	Man page
view_xy	Man page
view_xy,DFrame-method	Man page
view_xy,LinearEmbeddingMatrix-method	Man page
view_xy,matrix-method	Man page