sneezy_centroids: Animate a tour path with a centroids overlay

In sa-lee/sneezy: Interactively explore non-linear projections like t-SNE

Description

Animate a tour path with a centroids overlay

Usage

sneezy_centroids(.data, basis = 1, neighbor = 1, row_subset = NULL,
  centroid.col = "black", apf = 1/10, frames = 100, height = 400,
  width = 400, ...)

Arguments

.data	A TourExperiment object
basis	The name or position of a basisSet in .data, defaults to the first element. The name of the basisSet will also be used to extract the underlying data.
neighbor	The name or position of a neighborSet in .data, defaults to the first element.
row_subset	The number of rows to subset the view on, the default which is NULL will select all rows.
apf	angles per frame (defaults to 1/30)
frames	number of frames in animation (defaults to 300)
height	the size of the animation in pixels
width	the size of the animation in pixels
...	other control options passed to tourr::display_xy()
centroids.col	A character(1) with a color name for the centroid points (default = "black")

Examples

multi_te <- TourExperiment(multi, X1:X10)
multi_te <- generate_bases(multi_te, .on = "view")
multi_te <- estimate_neighbors(multi_te, 10, .on = "view")

sneezy_centroids(multi_te)

sa-lee/sneezy documentation built on Nov. 25, 2019, 12:38 p.m.