R/data.R

In saeyslab/muscatWrapper: Wrapper functions around muscat for differential expression analysis of multi-sample multi-condition scRNAseq datasets

## description of data

#' SingleCellExperiment object containing scRNAseq data (subsampled)
#'
#' SingleCellExperiment object containing scRNAseq data (subsampled). Source of the data: Puram et al., Cell 2017: “Single-Cell Transcriptomic Analysis of Primary and Metastatic Tumor Ecosystems in Head and Neck Cancer.”. This example data was downsampled (features and cells). Interesting metadata/colData columns: tumor, pEMT, pEMT_fine, celltype, batch
#'
#' @format An object of class SingleCellExperiment
#'
"sce"