Description Usage Arguments Details Examples

View source: R/compareSamples_volcanoplot.R

`compareSamples_volcanoplot`

1 2 | ```
compareSamples_volcanoplot(allData, controlName = "FS + FS", thPval = 0.1,
thEffectSize = 0.3)
``` |

`allData` |
list with one element for each patient sample/cell line, there must be at least 2 runs (i.e. full cycle) for each sample |

`controlName` |
name of the control sample, default is "FS+FS" |

`thPval` |
threshold on the p-value to be considered significant |

`thEffectSize` |
threshold on the effect size |

This function compare the distribution of the values measures for each condition across 2 or more samples computing p-values and effect size using parametric or non parametric tests. The comparison is visualised with a volcano plot showing the effect size vs the -log p-val

1 2 3 |

saezlab/BraDiPluS documentation built on May 20, 2018, 4:42 a.m.

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