Files in saezlab/CellNOpt-Feeder
Integration of CellNOptR to add missing links
DESCRIPTION
NAMESPACE
R/Binference.R
R/MIinference.R
R/addLink.R
R/addLinkAND.R
R/buildFeederObjectDynamic.R
R/computeMSE.R
R/computeScoreT1W.R
R/cutModelW.R
R/downCueGraph.R
R/gaBinaryT1W.R
R/getFitW.R
R/getLBodeContObjFunctionWeighted.R
R/identifyMisfitIndices.R
R/integrateLinks.R
R/linksRanking.R
R/makeBTables.R
R/mapBTables2model.R
R/mapDDN2model.R
R/parEstimationLBodeSSmWeighted.R
R/parEstimationLBodeWeighted.R
R/preprocessingWeighted.R
R/runDynamicFeeder.R
R/searchLinkGraph.R
R/searchPPIigraph.R
R/upSignalGraph.R
R/weighting.R
README.md
README.rst
data/CNOlistToy_Gene.RData
data/PPINigraph.RData
data/ToyModelPB.RData
data/ToyModelPBCNOlist.RData
data/ToyModel_Gene.RData
data/UniprotIDdream.RData
data/database.RData
data/feederObject_toy.RData
data/indices.RData
data/integratedModel_toy.RData
data/simData_toy.RData
inst/NEWS.Rd
inst/unitTests/test_inference.R
inst/unitTests/test_integration.R
inst/unitTests/test_weighting.R
man/Binference.Rd
man/CNORfeeder-package.Rd
man/MIinference.Rd
man/PPINigraph.Rd
man/UniprotIDdream.Rd
man/buildFeederObjectDynamic.Rd
man/gaBinaryT1W.Rd
man/identifyMisfitIndices.Rd
man/integrateLinks.Rd
man/linksRanking.Rd
man/makeBTables.Rd
man/mapBTables2model.Rd
man/mapDDN2model.Rd
man/runDynamicFeeder.Rd
man/weighting.Rd
tests/runTests.R
vignettes/CNORfeeder-vignette.Rnw
vignettes/DDN.pdf
vignettes/Dynamic-Feeder-Pipeline.pdf
vignettes/Figure1.png
vignettes/SimResultsT1_1.pdf
vignettes/data.pdf
vignettes/feeder-model.pdf
vignettes/initial-fit.pdf
vignettes/initial-model.pdf
vignettes/integratedModel.pdf
vignettes/optModel.pdf
vignettes/post-fit-high.pdf
vignettes/post-fit-low.pdf
