README.md

In saezlab/hefePK: yeast prior knowledge collection

hefePK

This package is a collection of prior knowledge ressources for yeast. Mainly, it contains a kianse substrate network, a transcription factor target netowrk and a prior knowledge network

Instalation

To install hefePK please run:

devtools::install_github('saezlab/hefePK')

Sources:

• PKN (signed, directed) : from STRING https://github.com/saezlab/conformationomic_yeast_picotti_2020/blob/master/scripts/format_STRING_PKN_signed.R

• KSN : from Biogrid https://github.com/saezlab/conformationomic_yeast_picotti_2020/blob/master/scripts/generate_KSN.R

• TF-target network: from JASPAR and yeastract https://github.com/saezlab/yeast_phospho/blob/master/files/tf_gene_network_binding_sites_posterior_90.tab https://github.com/ptgm/Paper_2020_Sci_Rep_scripts/blob/master/yeast2019-full-conds-net.txt

saezlab/hefePK documentation built on Dec. 22, 2021, 9:12 p.m.