reexports: Objects exported from other packages

In saezlab/misty: Multiview Intercellular SpaTial modeling framework

Objects exported from other packages

Description

These objects are imported from other packages. Follow the links below to see their documentation.

dplyr

%>%

Examples

# Create a view composition of an intraview and a paraview with radius 10 then
# run MISTy for a single sample.

library(dplyr)

# get the expression data
data("synthetic")
expr <- synthetic[[1]] %>% select(-c(row, col, type))
# get the coordinates for each cell
pos <- synthetic[[1]] %>% select(row, col)

# compose
misty.views <- create_initial_view(expr) %>% add_paraview(pos, l = 10)

# run with default parameters
run_misty(misty.views)

saezlab/misty documentation built on March 25, 2024, 4:11 p.m.