.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/angenieux.R
R/angenieux_theme.R
R/bamfile.R
R/fast5.R
R/fasta.R
R/fastq.R
R/file_check.R
R/floundeR.R
R/flowcell.R
R/genbank_genome.R
R/infographic.R
R/multiplex_set.R
R/ncbi_blast.R
R/sequencing_set.R
R/sequencing_summary.R
R/temporal_set.R
R/zzz.R
README.md
_pkgdown.yml
docs/404.html
docs/LICENSE-text.html
docs/articles/01_fasta_files.html
docs/articles/01_fasta_files_files/accessible-code-block-0.0.1/empty-anchor.js
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docs/news/index.html
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docs/pkgdown.js
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docs/reference/Angenieux.html
docs/reference/AngenieuxDecoration.html
docs/reference/Blast.html
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docs/reference/qualToMeanQ.html
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docs/reference/to_flowcell.html
docs/reference/to_sequencing_set.html
inst/extdata/TB_H37Rv.gb.gz
inst/extdata/barcoding_summary.txt.bz2
inst/extdata/cluster_cons.fasta.bgz
inst/extdata/cluster_cons.fasta.bgz.fai
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inst/extdata/drosophila_fl_sample.fasta.gz
inst/extdata/example.fastq.gz
inst/extdata/multi.fast5
inst/extdata/not_fast5.fast5
inst/extdata/prom.fast5
inst/extdata/sequencing_summary.txt.bz2
inst/extdata/single.fast5
man/Angenieux.Rd
man/AngenieuxDecoration.Rd
man/Blast.Rd
man/Fast5.Rd
man/Fasta.Rd
man/Fastq.Rd
man/FloundeR.Rd
man/Flowcell.Rd
man/GenbankGenome.Rd
man/Infographic.Rd
man/InfographicItem.Rd
man/MultiplexSet.Rd
man/SequencingSet.Rd
man/SequencingSummary.Rd
man/TemporalSet.Rd
man/flnDr.Rd
man/phredmean.Rd
man/qualToMeanQ.Rd
man/to_flowcell.Rd
man/to_sequencing_set.Rd
tests/testthat.R
tests/testthat/test-angenieux.R
tests/testthat/test-fast5.R
tests/testthat/test-fasta.R
tests/testthat/test-fastq.R
tests/testthat/test-flowcell.R
tests/testthat/test-genbank_genome.R
tests/testthat/test-infographic.R
tests/testthat/test-multiplex_set.R
tests/testthat/test-ncbi_blast.R
tests/testthat/test-sequencing_set.R
tests/testthat/test-sequencing_summary.R
tests/testthat/test-temporal_set.R
tests/testthat/testthat-problems.rds
vignettes/.gitignore
vignettes/01_fasta_files.Rmd
vignettes/02_fastq_files.Rmd
vignettes/03_fast5_files.Rmd
vignettes/04_seqsum_files.Rmd
vignettes/05_blast_files.Rmd
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vignettes/genbank_parsing.Rmd