phredmean: calculate mean Phred scores from list of Q values
In sagrudd/floundeR: Toolkit For Nanopore Sequence Analysis
phredmean R Documentation
calculate mean Phred scores from list of Q values
Description
This method calculates the mean quality value from a list of q-values;
handles the challenge of relative log-scaling of the Q and challenges of a
more linear mean; this avoids an artificial inflation of phred-scores
Usage
phredmean(q)
Arguments
q
is a vector of q values
Value
mean phred scaled q-value
Examples
mean(c(20,30,40))
phredmean(c(20,30,40))
sagrudd/floundeR documentation built on Nov. 18, 2022, 10:31 a.m.
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| phredmean | R Documentation |
calculate mean Phred scores from list of Q values
Description
This method calculates the mean quality value from a list of q-values; handles the challenge of relative log-scaling of the Q and challenges of a more linear mean; this avoids an artificial inflation of phred-scores
Usage
phredmean(q)
Arguments
q |
is a vector of q values |
Value
mean phred scaled q-value
Examples
mean(c(20,30,40)) phredmean(c(20,30,40))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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