process_bug_name: Pretty print taxonomy name.

In sagun98/mpuri: Microbiome Plotting Utilities in R (version I)

Description

process_bug_name cleans up full taxonomy names to display the most relevant information

Usage

process_bug_name(name, sep = ";")

Arguments

name	Unprocessed, full taxonomy name.
sep	String separating different levels of taxonomic names

Details

Tries to return genus + species, if species is present. If genus is not present (e.g. contains less than 4 consecutive alphabetical characters), tries to return the next highest level of classification. If that is not present, keeps trying.

Value

Return value will be a string that includes classification levels with consecutive alphabetical characters as a sub-level of the main level <4

sagun98/mpuri documentation built on Dec. 23, 2019, 6:32 p.m.