MixGGM_function: MixGGM function
In sahatava/MicNet:
Description
This function receives the sample-taxa count matrix and cluser the samples based on the MixGGM method.
Usage
1
MixGGM_function(X, K, penalty, init)
Arguments
K
number of components
penalty
"no_sparsity", "CV", "StARS" , "fixed" , "iterative"
init
"Kmeans"
file
name of the csv file as input data
out
"precision" , "partial" , "adj"
threshold
a value between 0 and 1 which indicates the threshod to generate the adjacency matrix
sahatava/MicNet documentation built on Nov. 5, 2019, 5:12 a.m.
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Description
This function receives the sample-taxa count matrix and cluser the samples based on the MixGGM method.
Usage
1 | MixGGM_function(X, K, penalty, init)
|
Arguments
K |
number of components |
penalty |
"no_sparsity", "CV", "StARS" , "fixed" , "iterative" |
init |
"Kmeans" |
file |
name of the csv file as input data |
out |
"precision" , "partial" , "adj" |
threshold |
a value between 0 and 1 which indicates the threshod to generate the adjacency matrix |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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