#library(flowr)
#system("env")
#set_opts(verbose = TRUE)
#opts_flow$get()
verbose = FALSE
opts_flow$set(verbose = 0)
#context("\n\nTesting a few cases")
test_that("flow case 1", {
skip("case 1")
wd = system.file("extdata/test_cases", package = "flowr")
#wd = "~/Dropbox2/Dropbox/public/github_flow/inst/extdata/test_cases"
#wd = "~/Dropbox/public/github_flow/inst/extdata/test_cases"
library(flowr)
flowmat = as.flowmat(file.path(wd, "flow_mat.tsv"))
flowdef = as.flowdef(file.path(wd, "flow_def.tsv"))
# cat(tmp)
tmp = tempdir()
fobj = to_flow(flowmat, def = flowdef, platform = "test", flow_run_path = tmp)
plot_flow(fobj)
#undebug(flowr:::submit_flow.flow)
submit_flow(fobj, execute = TRUE)
})
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