README.md
In saketkc/epicovr: A tool to model COVID19 variant prevalence using data from GISAID
Covmuller
Covmuller is an R-package designed for analysis of SARS-CoV-2 sequencing metadata deposited on GISAID.
Features
Covmuller currently supports the following features:
- Read and preprocess metadata file downloaded from GISAID: Vignette
- Plot variant prevalence: Vignette
- Fit multinomial models to variant prevalence data:
- Estimate totals prevalence of variants by projecting case prevalence data on multinomila fits:
saketkc/epicovr documentation built on April 17, 2024, 5:26 a.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Covmuller
Covmuller is an R-package designed for analysis of SARS-CoV-2 sequencing metadata deposited on GISAID.
Features
Covmuller currently supports the following features:
- Read and preprocess metadata file downloaded from GISAID: Vignette
- Plot variant prevalence: Vignette
- Fit multinomial models to variant prevalence data:
- Estimate totals prevalence of variants by projecting case prevalence data on multinomila fits:
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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