sales-lab/spatialDE: R wrapper for SpatialDE

SpatialDE is a method to find spatially variable genes (SVG) from spatial transcriptomics data. This package provides wrappers to use the Python SpatialDE library in R, using reticulate and basilisk.

Getting started

Package details

Bioconductor views Software Transcriptomics
Maintainer
LicenseMIT + file LICENSE
Version1.9.1
URL https://github.com/sales-lab/spatialDE https://bioconductor.org/packages/spatialDE/
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("sales-lab/spatialDE")
sales-lab/spatialDE documentation built on Feb. 12, 2024, 2:47 p.m.