boxPlotD_HC: Builds a boxplot from a dataframe using the library...

In samWieczorek/DAPAR: Tools for the Differential Analysis of Proteins Abundance with R

Builds a boxplot from a dataframe using the library highcharter

Description

Boxplot for quantitative proteomics data using the library highcharter

Usage

boxPlotD_HC(
  obj,
  conds,
  keyId = NULL,
  legend = NULL,
  pal = NULL,
  subset.view = NULL
)

Arguments

obj	Numeric matrix
conds	xxx
keyId	xxxx
legend	A vector of the conditions (one condition per sample).
pal	A basis palette for the boxes which length must be equal to the number of unique conditions in the dataset.
subset.view	A vector of index indicating which rows to highlight

Value

A boxplot

Author(s)

Samuel Wieczorek, Anais Courtier, Enora Fremy

Examples

utils::data(Exp1_R25_prot, package='DAPARdata')
obj <- Exp1_R25_prot
conds <- legend <- Biobase::pData(obj)$Condition
key <- "Protein_IDs"
boxPlotD_HC(obj, conds, key, legend, NULL, 1:10)
pal <- ExtendPalette(length(unique(conds)))
boxPlotD_HC(obj, conds, key, legend, pal, 1:10)

samWieczorek/DAPAR documentation built on May 6, 2022, 5:30 p.m.