dataset-processing: Datasets processing

In samWieczorek/Magellan: A Pipeline Manager

Datasets processing

Description

This manual page describes manipulation methods using [list] objects. In the following functions, if 'object' is of class 'list', and optional assay index or name 'i' can be specified to define the assay (by name of index) on which to operate.

The following functions are currently available:

- 'Keep_Datasets_from_Object(object, range)' keep datasets in object which are in range

- ‘Add_Datasets_to_Object(object, dataset, name)' add the ’dataset' to the object (of type list)

- 'Save(object, file)' stores the object to a .RData file

Usage

## S4 method for signature ''NULL''
Keep_Datasets_from_Object(object, range)

## S4 method for signature 'list'
Keep_Datasets_from_Object(object, range)

## S4 method for signature ''NULL''
Add_Datasets_to_Object(object, dataset, name)

## S4 method for signature 'list'
Add_Datasets_to_Object(object, dataset, name)

Arguments

object	An object of class 'list'.
range	A xxxx
dataset	'character(1)' providing the base with respect to which logarithms are computed. Default is log2.
name	A 'character(1)' naming the new assay name.

Details

The object must be of type list. Thetwo functions are implemented here for a simple list. For other dataset classes, their implementation must be part of the package which uses Magellan.

Value

An processed object of the same class as 'object'.

samWieczorek/Magellan documentation built on March 30, 2022, 3:40 a.m.