Files in samychillara/ScRB
What the Package Does (One Line, Title Case)
.Rbuildignore
.Rhistory
.gitattributes
.gitignore
DESCRIPTION
NAMESPACE
R/analysis.R
R/core.R
R/main.R
R/utils.R
R/visualisation.R
R/visualisation_Ref.R
ScRb.Rproj
extdata/CellType_bg/ScRbRef_TM_Bcell/TM_Bcell_NormData.rds
extdata/CellType_bg/ScRbRef_TM_Bcell/TM_Bcell_PrepData.rds
extdata/CellType_bg/ScRbRef_TM_Bcell/TM_Bcell_sf.txt
extdata/CellType_bg/ScRbRef_TM_Bcell/TM_Bcell_th_dist.rds
extdata/CellType_bg/ScRbRef_TM_NKcell/TM_NKcell_NormData.rds
extdata/CellType_bg/ScRbRef_TM_NKcell/TM_NKcell_PrepData.rds
extdata/CellType_bg/ScRbRef_TM_NKcell/TM_NKcell_sf.txt
extdata/CellType_bg/ScRbRef_TM_NKcell/TM_NKcell_th_dist.rds
extdata/CellType_bg/ScRbRef_TM_T cell/TM_T cell_NormData.rds
extdata/CellType_bg/ScRbRef_TM_T cell/TM_T cell_PrepData.rds
extdata/CellType_bg/ScRbRef_TM_T cell/TM_T cell_sf.txt
extdata/CellType_bg/ScRbRef_TM_T cell/TM_T cell_th_dist.rds
extdata/CellType_bg/ScRbRef_TM_basal epithelial cell/TM_basal epithelial cell_NormData.rds
extdata/CellType_bg/ScRbRef_TM_basal epithelial cell/TM_basal epithelial cell_PrepData.rds
extdata/CellType_bg/ScRbRef_TM_basal epithelial cell/TM_basal epithelial cell_sf.txt
extdata/CellType_bg/ScRbRef_TM_basal epithelial cell/TM_basal epithelial cell_th_dist.rds
extdata/CellType_bg/ScRbRef_TM_basophil/TM_basophil_NormData.rds
extdata/CellType_bg/ScRbRef_TM_basophil/TM_basophil_PrepData.rds
extdata/CellType_bg/ScRbRef_TM_basophil/TM_basophil_sf.txt
extdata/CellType_bg/ScRbRef_TM_basophil/TM_basophil_th_dist.rds
extdata/CellType_bg/ScRbRef_TM_dendritic cell/TM_dendritic cell_NormData.rds
extdata/CellType_bg/ScRbRef_TM_dendritic cell/TM_dendritic cell_PrepData.rds
extdata/CellType_bg/ScRbRef_TM_dendritic cell/TM_dendritic cell_sf.txt
extdata/CellType_bg/ScRbRef_TM_endothelial cell/TM_endothelial cell_NormData.rds
extdata/CellType_bg/ScRbRef_TM_endothelial cell/TM_endothelial cell_PrepData.rds
extdata/CellType_bg/ScRbRef_TM_endothelial cell/TM_endothelial cell_sf.txt
extdata/CellType_bg/ScRbRef_TM_endothelial cell/TM_endothelial cell_th_dist.rds
extdata/CellType_bg/ScRbRef_TM_epithelial cell/TM_epithelial cell_NormData.rds
extdata/CellType_bg/ScRbRef_TM_epithelial cell/TM_epithelial cell_PrepData.rds
extdata/CellType_bg/ScRbRef_TM_epithelial cell/TM_epithelial cell_sf.txt
extdata/CellType_bg/ScRbRef_TM_epithelial cell/TM_epithelial cell_th_dist.rds
extdata/CellType_bg/ScRbRef_TM_fibroblast/TM_fibroblast_NormData.rds
extdata/CellType_bg/ScRbRef_TM_fibroblast/TM_fibroblast_PrepData.rds
extdata/CellType_bg/ScRbRef_TM_fibroblast/TM_fibroblast_sf.txt
extdata/CellType_bg/ScRbRef_TM_fibroblast/TM_fibroblast_th_dist.rds
extdata/CellType_bg/ScRbRef_TM_leukocyte/TM_leukocyte_NormData.rds
extdata/CellType_bg/ScRbRef_TM_leukocyte/TM_leukocyte_PrepData.rds
extdata/CellType_bg/ScRbRef_TM_leukocyte/TM_leukocyte_sf.txt
extdata/CellType_bg/ScRbRef_TM_leukocyte/TM_leukocyte_th_dist.rds
extdata/CellType_bg/ScRbRef_TM_luminal epithelial cell/TM_luminal epithelial cell_NormData.rds
extdata/CellType_bg/ScRbRef_TM_luminal epithelial cell/TM_luminal epithelial cell_PrepData.rds
extdata/CellType_bg/ScRbRef_TM_luminal epithelial cell/TM_luminal epithelial cell_sf.txt
extdata/CellType_bg/ScRbRef_TM_luminal epithelial cell/TM_luminal epithelial cell_th_dist.rds
extdata/CellType_bg/ScRbRef_TM_macrophage/TM_macrophage_NormData.rds
extdata/CellType_bg/ScRbRef_TM_macrophage/TM_macrophage_PrepData.rds
extdata/CellType_bg/ScRbRef_TM_macrophage/TM_macrophage_sf.txt
extdata/CellType_bg/ScRbRef_TM_macrophage/TM_macrophage_th_dist.rds
extdata/CellType_bg/ScRbRef_TM_monocyte/TM_monocyte_NormData.rds
extdata/CellType_bg/ScRbRef_TM_monocyte/TM_monocyte_PrepData.rds
extdata/CellType_bg/ScRbRef_TM_monocyte/TM_monocyte_sf.txt
extdata/CellType_bg/ScRbRef_TM_monocyte/TM_monocyte_th_dist.rds
extdata/CellType_bg/ScRbRef_TM_myeloid cell/TM_myeloid cell_NormData.rds
extdata/CellType_bg/ScRbRef_TM_myeloid cell/TM_myeloid cell_PrepData.rds
extdata/CellType_bg/ScRbRef_TM_myeloid cell/TM_myeloid cell_sf.txt
extdata/CellType_bg/ScRbRef_TM_myeloid cell/TM_myeloid cell_th_dist.rds
extdata/CellType_bg/ScRbRef_TM_stromal cell/TM_stromal cell_NormData.rds
extdata/CellType_bg/ScRbRef_TM_stromal cell/TM_stromal cell_PrepData.rds
extdata/CellType_bg/ScRbRef_TM_stromal cell/TM_stromal cell_sf.txt
extdata/CellType_bg/ScRbRef_TM_stromal cell/TM_stromal cell_th_dist.rds
extdata/TM_bg/.Rhistory
extdata/TM_bg/Tm_bg_PrepData.rds
extdata/TM_bg/Tm_bg_sf.txt
extdata/TM_bg/Tm_bg_th_dist.rds
extdata/TM_bg/metadata.csv
extdata/Tissue_bg/ScRbRef_TM_Bladder_bg/TM_Bladder_bg_NormData.rds
extdata/Tissue_bg/ScRbRef_TM_Bladder_bg/TM_Bladder_bg_PrepData.rds
extdata/Tissue_bg/ScRbRef_TM_Bladder_bg/TM_Bladder_bg_sf.txt
extdata/Tissue_bg/ScRbRef_TM_Bladder_bg/TM_Bladder_bg_th_dist.rds
extdata/Tissue_bg/ScRbRef_TM_Heart_and_Aorta_bg/TM_Heart_and_Aorta_bg_NormData.rds
extdata/Tissue_bg/ScRbRef_TM_Heart_and_Aorta_bg/TM_Heart_and_Aorta_bg_PrepData.rds
extdata/Tissue_bg/ScRbRef_TM_Heart_and_Aorta_bg/TM_Heart_and_Aorta_bg_sf.txt
extdata/Tissue_bg/ScRbRef_TM_Heart_and_Aorta_bg/TM_Heart_and_Aorta_bg_th_dist.rds
extdata/Tissue_bg/ScRbRef_TM_Kidney_bg/TM_Kidney_bg_NormData.rds
extdata/Tissue_bg/ScRbRef_TM_Kidney_bg/TM_Kidney_bg_PrepData.rds
extdata/Tissue_bg/ScRbRef_TM_Kidney_bg/TM_Kidney_bg_sf.txt
extdata/Tissue_bg/ScRbRef_TM_Kidney_bg/TM_Kidney_bg_th_dist.rds
extdata/Tissue_bg/ScRbRef_TM_Limb_Muscle_bg/TM_Limb_Muscle_bg_NormData.rds
extdata/Tissue_bg/ScRbRef_TM_Limb_Muscle_bg/TM_Limb_Muscle_bg_PrepData.rds
extdata/Tissue_bg/ScRbRef_TM_Limb_Muscle_bg/TM_Limb_Muscle_bg_sf.txt
extdata/Tissue_bg/ScRbRef_TM_Limb_Muscle_bg/TM_Limb_Muscle_bg_th_dist.rds
extdata/Tissue_bg/ScRbRef_TM_Liver_bg/TM_Liver_bg_NormData.rds
extdata/Tissue_bg/ScRbRef_TM_Liver_bg/TM_Liver_bg_PrepData.rds
extdata/Tissue_bg/ScRbRef_TM_Liver_bg/TM_Liver_bg_sf.txt
extdata/Tissue_bg/ScRbRef_TM_Liver_bg/TM_Liver_bg_th_dist.rds
extdata/Tissue_bg/ScRbRef_TM_Lung_bg/TM_Lung_bg_NormData.rds
extdata/Tissue_bg/ScRbRef_TM_Lung_bg/TM_Lung_bg_PrepData.rds
extdata/Tissue_bg/ScRbRef_TM_Lung_bg/TM_Lung_bg_sf.txt
extdata/Tissue_bg/ScRbRef_TM_Lung_bg/TM_Lung_bg_th_dist.rds
extdata/Tissue_bg/ScRbRef_TM_Mammary_Gland_bg/TM_Mammary_Gland_bg_NormData.rds
extdata/Tissue_bg/ScRbRef_TM_Mammary_Gland_bg/TM_Mammary_Gland_bg_PrepData.rds
extdata/Tissue_bg/ScRbRef_TM_Mammary_Gland_bg/TM_Mammary_Gland_bg_sf.txt
extdata/Tissue_bg/ScRbRef_TM_Mammary_Gland_bg/TM_Mammary_Gland_bg_th_dist.rds
extdata/Tissue_bg/ScRbRef_TM_Marrow_bg/TM_Marrow_bg_NormData.rds
extdata/Tissue_bg/ScRbRef_TM_Marrow_bg/TM_Marrow_bg_PrepData.rds
extdata/Tissue_bg/ScRbRef_TM_Marrow_bg/TM_Marrow_bg_sf.txt
extdata/Tissue_bg/ScRbRef_TM_Marrow_bg/TM_Marrow_bg_th_dist.rds
extdata/Tissue_bg/ScRbRef_TM_Spleen_bg/TM_Spleen_bg_NormData.rds
extdata/Tissue_bg/ScRbRef_TM_Spleen_bg/TM_Spleen_bg_PrepData.rds
extdata/Tissue_bg/ScRbRef_TM_Spleen_bg/TM_Spleen_bg_sf.txt
extdata/Tissue_bg/ScRbRef_TM_Spleen_bg/TM_Spleen_bg_th_dist.rds
extdata/Tissue_bg/ScRbRef_TM_Thymus_bg/TM_Thymus_bg_NormData.rds
extdata/Tissue_bg/ScRbRef_TM_Thymus_bg/TM_Thymus_bg_PrepData.rds
extdata/Tissue_bg/ScRbRef_TM_Thymus_bg/TM_Thymus_bg_sf.txt
extdata/Tissue_bg/ScRbRef_TM_Thymus_bg/TM_Thymus_bg_th_dist.rds
extdata/Tissue_bg/ScRbRef_TM_Tongue_bg/TM_Tongue_bg_NormData.rds
extdata/Tissue_bg/ScRbRef_TM_Tongue_bg/TM_Tongue_bg_PrepData.rds
extdata/Tissue_bg/ScRbRef_TM_Tongue_bg/TM_Tongue_bg_sf.txt
extdata/Tissue_bg/ScRbRef_TM_Tongue_bg/TM_Tongue_bg_th_dist.rds
man/.Rhistory
man/Background_sampling.Rd
man/Compare.GeneActivity.Rd
man/DAG.Rd
man/Data.gexp.stats.Rd
man/DataNorm.Rd
man/Data_prep1.Rd
man/Data_prep2.Rd
man/Discretise_data.Rd
man/GetThreshDist.Rd
man/LogNorm.Rd
man/PrepQueryData.Rd
man/PrepRefData.Rd
man/Split.Data.Rd
man/classify.Rd
man/combine.subset.Rd
man/compute_pval.Rd
man/createThresholdDist.Rd
man/cutoff.select.Rd
man/gene.activity.summary.Rd
man/read.genelist.Rd
man/scaleMaxGexp.Rd
man/scrb_norm.Rd
man/write.genelist.Rd
