allwise_p_chisq: Calculate p-value for C-chisq

In samyeaman/dgconstraint: Calculates Metrics of Diversity Constraint for Genomics of Adaptation

Calculate p-value for C-chisq

Description

allwise_p_chisq returns the p-value for 'all lineages' contrast using chi-square. Setting na.rm = T assumes that missing values are true negatives.

Usage

allwise_p_chisq(input, num_permute = 10000, na.rm = F)

Arguments

input	numeric array
num_permute	numeric
na.rm	boolean

Value

length-one numeric

Examples

array1 <- array (0,c(5000,20))
array1[cbind(1:20,1:20)] <- 1
array1[1:5,1:3] <- 1
array1[6:10,4:6] <- 1
allwise_p_chisq (array1)

samyeaman/dgconstraint documentation built on July 25, 2022, 4:36 a.m.