codon_distance: Codon distance
In santiago1234/optimalcodonR: iCodon: Designing "ideal" coding (iCodon) sequences for customized expression level
codon_distance R Documentation
Codon distance
Description
compute the number of codon differences between the two sequences
Usage
codon_distance(seq_variant1, seq_variant2, proportion = FALSE)
Arguments
seq_variant1
string: coding dna, must be in frame
seq_variant2
string: coding dna, must be in frame
proportion
logical: if true, returns the distance as a proportion
(1 = all codons are different, 0 = no differences)
Value
int, number of codon diferences
Examples
codon_distance("ATGCTG", "ATGCTT")
santiago1234/optimalcodonR documentation built on Oct. 31, 2023, 4:32 p.m.
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| codon_distance | R Documentation |
Codon distance
Description
compute the number of codon differences between the two sequences
Usage
codon_distance(seq_variant1, seq_variant2, proportion = FALSE)
Arguments
seq_variant1 |
string: coding dna, must be in frame |
seq_variant2 |
string: coding dna, must be in frame |
proportion |
logical: if true, returns the distance as a proportion (1 = all codons are different, 0 = no differences) |
Value
int, number of codon diferences
Examples
codon_distance("ATGCTG", "ATGCTT")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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