Man pages for sarahodell/magicsim
What the Package Does (One Line, Title Case)
| backcross | backcross ————- Backcross an Indv object |
| backcross_pop | backcross_pop ————- Intialize a Pop object created by... |
| Chrom-class | Chrom |
| chrom_init | Intialize a chromosome object (diploid) |
| ChromPair-class | ChromPair |
| count_breakpoints | Count the number of breakpoints per individual |
| crossover | Simulate a crossover between homologous chromosomes of a... |
| get_gametes | Generates a gamete randomly from one of the two chromosomes,... |
| Indv-class | Indv |
| indv_init | Intialize an Indv object |
| IndvPheno-class | IndvPheno |
| interference | If the two crossover events are too close to each other, only... |
| make_dh | make_dh —————- Creates an Indv object of doubled... |
| make_dh_pop | make_dh_pop —————- Creates a Pop object of doubled... |
| make_f1 | Create an F1 from two parents |
| make_indv_breaktable | make_indv_breaktable ————- Create dataframe of... |
| make_magic | make_magic —————- Creates a MAGIC line in funnel... |
| make_magic_pop | make_magic_pop —————- Creates a MAGIC population in... |
| make_pop_breaktable | make_pop_breaktable ————- Create dataframe of... |
| make_subtable | make_subtable ————- |
| no_breaks | Check if the chromosome has any breakpoints |
| offspring | Generate offspring from a cross between two parents |
| outcross | Function to outcross population for ngen generations |
| pheno_init | Intialize a Phenotype object |
| Phenotype-class | Phenotype |
| plot_Indv | plot_Indv ————– Plot all chromosomes of a single... |
| plot_Pop | plot_Pop ————– |
| Pop-class | Pop |
| pop_init | Intialize a Pop object |
| remove_unseen | remove_unseen ————- remove invisible crossovers from... |
| self | self ————- Self an Indv object |
| self_pop | self_pop ————- Self a Pop object |
