backcross | backcross ————- Backcross an Indv object |
backcross_pop | backcross_pop ————- Intialize a Pop object created by... |
Chrom-class | Chrom |
chrom_init | Intialize a chromosome object (diploid) |
ChromPair-class | ChromPair |
count_breakpoints | Count the number of breakpoints per individual |
crossover | Simulate a crossover between homologous chromosomes of a... |
get_gametes | Generates a gamete randomly from one of the two chromosomes,... |
Indv-class | Indv |
indv_init | Intialize an Indv object |
IndvPheno-class | IndvPheno |
interference | If the two crossover events are too close to each other, only... |
make_dh | make_dh —————- Creates an Indv object of doubled... |
make_dh_pop | make_dh_pop —————- Creates a Pop object of doubled... |
make_f1 | Create an F1 from two parents |
make_indv_breaktable | make_indv_breaktable ————- Create dataframe of... |
make_magic | make_magic —————- Creates a MAGIC line in funnel... |
make_magic_pop | make_magic_pop —————- Creates a MAGIC population in... |
make_pop_breaktable | make_pop_breaktable ————- Create dataframe of... |
make_subtable | make_subtable ————- |
no_breaks | Check if the chromosome has any breakpoints |
offspring | Generate offspring from a cross between two parents |
outcross | Function to outcross population for ngen generations |
pheno_init | Intialize a Phenotype object |
Phenotype-class | Phenotype |
plot_Indv | plot_Indv ————– Plot all chromosomes of a single... |
plot_Pop | plot_Pop ————– |
Pop-class | Pop |
pop_init | Intialize a Pop object |
remove_unseen | remove_unseen ————- remove invisible crossovers from... |
self | self ————- Self an Indv object |
self_pop | self_pop ————- Self a Pop object |
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