title: "brainImageRdata" author: "Sara Linker" date: "r Sys.Date()" output: rmarkdown::html_vignette vignette: > %\VignetteEngine{knitr::rmarkdown} %\VignetteIndexEntry{brainImageRdata} %\VignetteEncoding{UTF-8} theme: lumen


knitr::opts_chunk$set(
    collapse = TRUE,
    comment = "#>"
)

BrainImageRdata provides the brainmaps and gene expression data to be used with the companion package brainImager. BrainImageR will internally reference these datasets. They do not need to be accessed by the user directly.

To load the brainImageRdata datasets into your workspace:

 hub <- ExperimentHub::ExperimentHub()
 a <- list()
    a[1] <- hub[["EH1434"]]
    a[2] <- hub[["EH1435"]]
    a[3] <- hub[["EH1436"]]
    a[4] <- hub[["EH1437"]]
    a[5] <- hub[["EH1438"]]
    a[6] <- hub[["EH1439"]]
    a[7] <- hub[["EH1440"]]
    a[8] <- hub[["EH1441"]]
    a[9] <- hub[["EH1442"]]
    a[10] <- hub[["EH1443"]]
    a[11] <- hub[["EH1444"]]
    a[12] <- hub[["EH1445"]]
    a[13] <- hub[["EH1446"]]
    a[14] <- hub[["EH1447"]]
    a[15] <- hub[["EH1448"]]
    a[16] <- hub[["EH1449"]]
    a[17] <- hub[["EH1450"]]
    a[18] <- hub[["EH1451"]]

brainImageR Experiment Hub Objects:

For a full description of each object please run make-metadata.R. In brief:

EH1434:

EH1435:

EH1436:

EH1437:

EH1438:

EH1439:

EH1440:

EH1441:

EH1442:

EH1443:

EH1444:

EH1445:

EH1446:

EH1447:

EH1448:

EH1449:

EH1450:

EH1451:



saralinker/brainImageRdata documentation built on May 9, 2019, 8:18 a.m.