API for sarangian/deaRscripts
Differential Expression Analysis based on the read count data generated by either of Salmon, Kallisto, featureCounts and perform statistical analysis to discover quantitative changes in expression levels between two different experimental groups
| Global functions | |
|---|---|
| EC2gene | Source code |
| check_char1 | Source code |
| check_gff | Source code |
| check_tag_present | Source code |
| exportResults.DESeq2 | Man page Source code |
| exportResults.edgeR | Man page Source code |
| loadTargetFile | Man page Source code |
| nDiffTotal | Man page Source code |
| read_count_output | Source code |
| read_velocity_output | Source code |
| run.DESeq2_corset | Man page Source code |
| run.DESeq2_trans | Man page Source code Source code Source code |
| run.edgeR | Man page Source code |
| run.edgeR_trans | Man page Source code |
| save_tr2g_bustools | Source code |
| sort_tr2g | Source code |
| species2dataset | Source code |
| summarizeResults.DESeq2 | Man page Source code |
| summarizeResults.edgeR | Man page Source code |
| tr2g_EnsDb | Man page Source code |
| tr2g_GRanges | Man page Source code |
| tr2g_TxDb | Man page Source code |
| tr2g_ensembl | Man page Source code |
| tr2g_fasta | Man page Source code |
| tr2g_gff3 | Man page Source code |
| tr2g_gtf | Man page Source code |
| tr2g_junction | Man page |
| transcript2gene | Source code |
