Man pages for satabdisaha1288/scBT
What the Package Does (One Line, Title Case)
| batchANOVA | Performs a genewise ANOVA test on a SingleCellExperiment... |
| batchKW | Performs a genewise Kruskal Wallis test on a... |
| batchWRS | Performs a genewise Wilcoxon Rank Sum test on a... |
| benchmark | General function to run the statistical test abstracting much... |
| benchmarkDETests | General function to run the statistical test abstracting much... |
| benchmarkSim | General function to run the statistical test abstracting much... |
| benchmarkSim_batch | General function to run the statistical test abstracting much... |
| calcPosteriorProbNull | Title Calculate FDR adjusted threshold for posterior... |
| calculate_BF | Title Compute Bayes factors for all the p-genes |
| calculate_concordance_AUC | Calculate concordance AUC Refer to: Soneson, Charlotte, and... |
| calculate_threshold_posterior_prob_null_bayes | Title Calculate FDR adjusted threshold for posterior... |
| compute_PR_curve | Title Computes PR curve for DEG classification |
| compute_ROC_curve | Title Computes ROC curve for DEG classification |
| data_group_summary | Summarises data by groups |
| DETest | Differential expression testing |
| DoseMatrix2List | Calculate a_sigma, b_sigma |
| filterLow | General function to run the statistical test abstracting much... |
| getDEGs | General function to run the statistical test abstracting much... |
| log.lklh.marginal.alt | Title Compute the marginal log-likehihood of the p-genes... |
| log.lklh.marginal.null | Title Compute the marginal log-likehihood of the p-genes... |
| logProd | INSERT DESCRIPTION HERE |
| LRT_linearModel | Title Reworked version of LRT_linearModel.R (no-loops) |
| LRT_multiple_groups | INSERT DESCRIPTION HERE |
| LRT_multipleModel | INSERT DESCRIPTION |
| runAnova | Performs a ANOVA test on a logcounts vector for a given dose |
| runKW | Performs a Kruskal Wallis test on a logcounts vactor for a... |
| runLimmaTrend | Performs a genewise Wilcoxon Rank Sum test on a... |
| runLRT_Linear | Title Reworked version of LRT_linearModel.R (no-loops) |
| runMAST | INSERT DESCRIPTION |
| runMASTDR | INSERT DESCRIPTION |
| runSeuratBimod | Apply the Seurat Bimod test on a dose-response... |
| runWRS | Performs a Wilcoxon Rank Sum test on a logcounts vector for a... |
| sceCalcPriors | INSERT DESCRIPTION |
| summarizeBenchmark | General function to run the statistical test abstracting much... |
| TruthFromSim | General function to run the statistical test abstracting much... |
| validateDRsce | General function to run the statistical test abstracting much... |
