README_widgets.md

In sbalci/ClinicoPathDescriptives: Descriptive Analysis Tools for Clinicopathological Research

README Widgets for ClinicoPathDescriptives

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Installation Widgets

R Package Installation

## Installation

### Install from GitHub
```r
# Install development version
if (!require("remotes")) install.packages("remotes")
remotes::install_github("sbalci/ClinicoPathDescriptives")

Install as jamovi Module

Download the .jmo file from Releases and install in jamovi via: jamovi menu > Modules > Install from file

## Feature Highlight Widgets

### Analysis Functions Grid
```markdown
## Available Analyses

| Function | Description | Clinical Use |
|----------|-------------|--------------|
| 📊 **Table One** | Descriptive summary tables | Baseline characteristics |
| 📈 **Summary Data** | Continuous variable summaries | Biomarker analysis |
| 📋 **Report Categorical** | Categorical variable reports | Demographics |
| ⚡ **Cross Tables** | Cross-tabulations with tests | Association studies |
| 🌊 **Alluvial Diagrams** | Categorical relationships | Patient flow |
| 👥 **Age Pyramid** | Age-sex distributions | Population studies |
| 🔍 **Benford Analysis** | Data quality assessment | Fraud detection |
| ⭕ **Venn Diagrams** | Set relationships | Biomarker overlap |
| 🌳 **Variable Tree** | Hierarchical summaries | Data exploration |
| 📉 **Waterfall Plots** | Treatment response (RECIST) | Oncology trials |
| 🏊 **Swimmer Plots** | Patient timelines | Follow-up studies |

Quick Start Widget

## Quick Start

### In R
```r
library(ClinicoPathDescriptives)

# Load example data
data(histopathology)

# Generate Table One
tableone(data = histopathology, 
         vars = c("Age", "Sex", "Grade"),
         group = "Diagnosis")

In jamovi

1. Install the ClinicoPath module
2. Open your data in jamovi
3. Navigate to Exploration > ClinicoPath Descriptives
4. Select your analysis function

## Citation Widget
```markdown
## Citation

```r
citation("ClinicoPathDescriptives")

BibTeX:

@Manual{ClinicoPathDescriptives,
  title = {ClinicoPathDescriptives: Descriptive Analysis Tools for Clinicopathological Research},
  author = {Serdar Balci},
  year = {2024},
  note = {R package version 0.0.3.21},
  url = {https://github.com/sbalci/ClinicoPathDescriptives},
}

## Support and Community Widgets
```markdown
## Support

- 📖 [Documentation](https://www.serdarbalci.com/ClinicoPathDescriptives/)
- 🐛 [Report Issues](https://github.com/sbalci/ClinicoPathJamoviModule/issues)
- 💬 [Discussions](https://github.com/sbalci/ClinicoPathDescriptives/discussions)
- 🌐 [jamovi Module Hub](https://sbalci.github.io/ClinicoPathJamoviModule/)

## Contributing

Contributions are welcome! Please see our [Contributing Guidelines](CONTRIBUTING.md) for details.

## Related Projects

- [ClinicoPath jamovi Module](https://github.com/sbalci/ClinicoPathJamoviModule) - Main jamovi module
- [ClinicoPath Website](https://sbalci.github.io/ClinicoPathJamoviModule/) - Documentation and tutorials

Compact Badge Collection

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sbalci/ClinicoPathDescriptives documentation built on July 4, 2025, 5:25 p.m.