In sbalci/histopathR: Template and R Codes Used in Histopathologic Research

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)

histopathR

UNDER CONSTRUCTION 🛠⛔️⚠️🔩

Completing a package will take some time. That is why I have started a template repository on GitHub.

• https://github.com/sbalci/histopathology-template/
• https://sbalci.github.io/histopathology-template/

• https://sbalci.github.io/histopathology-template/Report.html

• These templates will allow me to make histopathology research data analysis easier and more standard.

• I have added clinicopathological analysis templates:
  https://sbalci.github.io/histopathology-template/Report.html
• I plan to add bibliometrics, image analysis and text analysis templates as well.

https://sbalci.github.io/histopathR/

Follow @serdarbalci

---

rmarkdown::draft(file = "myfile",
                 template = "clinicopathological",
                 package = "histopathR",
                 create_dir = TRUE,
                 edit = TRUE)

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🔬 I plan to collect codes for future research. I will add some small functions.
- Methods to import and prepare data for analysis.
- Descriptive statistics.
- Hypothesis tests.
- Survival analysis.
- Regression analysis.
- Cluster analysis.

🔬 I plan to make template files to form when loading the package.

🔬 I plan two tutorial files as vignettes:
- How to prepare data for histopathological research
- How to analyse data for histopathological research

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A work by Serdar Balci

[e-mail]

 

sbalci/histopathR documentation built on Nov. 12, 2024, 12:28 p.m.