plt.single.class.importance: Single class importance plot
In sbbrandt/xgbAnalysis: Reaction coordinates analysis

Description Usage Arguments

Plot the feature importance per state. Feature importance is normalized.
Specify colmin to obtain a plot containing all coordinates with a feature importance larger than this minimum importance.
Specify nfeatures to obtain a plot containing the n most important coordinates. TODO update parameter descriptions

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plt.single.class.importance(pre = "singleClassImportance/sci", model = NA,
  names = NA, states = NA, colmin = NA, nfeatures = NA, pdim = 10,
  width = 1)

`pre`	prefix for saved plots
`model`	directory to xgb.model file. If NA (default) model from ./model/xgb.model is taken.
`names`	custom feature (coordinate) names file
`states`	custom states file (default=NA : states are numbered consecutively starting from 1)
`colmin`	Sets minimum of imnportance a feature has to contribute to at least one class. Can be set as vector to produce multiple plots: colmin = c(0.1,0.2,0.3)
`nfeatures`	Returns plot with 'nfeatures' most important features. Can be set as vector to produce multiple plots: c(4,5,6)
`pdim`	plot dimension (height = pdim)
`width`	plot width (pdim*width)