Man pages for sbfnk/ebola.forecast.wa.sl
Code accompanying the manuscript "Assessing the performance of real-time epidemic forecasts: A case study of Ebola in the Western Area region of Sierra Leone, 2014-15" (doi:10.1371/journal.pcbi.1006785).
| ae_sample | Determines the mean absolute error of an incidence forecast... |
| apply_forecast_metric | Determines calibration of an incidence forecast with an... |
| assess_all_forecasts | Applies forecast assessments and scores to the forecasts and... |
| assess_incidence_forecast | Assesses incidence forecasts for the 2014-15 Ebola epidemic... |
| bias_sample | Determines bias of an incidence forecast from predictive... |
| calculate_quantiles | Calculate quantiles for a data frame |
| calibration_sample | Determines sharpness of an incidence forecast with an... |
| ebola_wa | Ebola case data set for Western Area, Sierra Leone |
| figure1 | Plots figure 1 |
| figure2 | Plots figure 2 |
| figure3 | Plots figure 3 |
| figure4 | Plots figure 4 |
| null_model_bsts | Creates Bayesian time-series regression null model forecasts... |
| null_model_deterministic | Creates deterministic null model forecasts for "Assessing the... |
| null_model_unfocused | Creates unfocused null model forecasts for "Assessing the... |
| pit_test_sample | Performs an Anderson-Darling test for uniformity for a... |
| samples_bsts | Monte Carlo samples from bsts forecasts |
| samples_deterministic | Monte Carlo samples from deterministic forecasts |
| samples_semi_mechanistic | Monte Carlo samples from semi-mechanistic forecasts |
| samples_unfocused | Monte Carlo samples from unfocused forecasts |
| sharpness_sample | Determines sharpness of an incidence forecast as the width of... |
| table1 | Prints table 1 |
| table2 | Prints table 2 |
