compose_parametric: Compose BioCompute Object - Parametric Domain (v1.4.2)
In sbg/biocompute: Create and Manipulate BioCompute Objects

compose_parametric_v1.4.2

R Documentation

Compose BioCompute Object - Parametric Domain (v1.4.2)

Description

Non-default parameters customizing the computational flow which can affect the output of the calculations (domain definition).

Usage

compose_parametric_v1.4.2(df = NULL)

compose_parametric(df = NULL)

Arguments

`df`	Data frame. Variables include `param` (parameter names), `value` (value of the parameters), and `step` (step number for each parameter).

Value

A list of class bco.domain

Examples

df_parametric <- data.frame(
  "param" = c(
    "seed", "minimum_match_len",
    "divergence_threshold_percent",
    "minimum_coverage", "freq_cutoff"
  ),
  "value" = c("14", "66", "0.30", "15", "0.10"),
  "step" = c(1, 1, 1, 2, 2)
)

compose_parametric(df_parametric) %>% convert_json()

sbg/biocompute documentation built on June 11, 2024, 6:16 a.m.