quantileNormalization: Quantile normalization of frame/matrix with respect to...

In sboehringer/plausibility: Plausibility based estimation and inference

Quantile normalization of frame/matrix with respect to reference distribution

Description

Distribution to be normalized are represented as columns or rows of a matrix/data frame. Each value is replaced by the quantile of the reference distribution as given by the value of the empirical distribution function of the given value.

Usage

quantileNormalization(
  reference,
  data,
  direction = 2,
  impute = TRUE,
  ties = "random",
  center = TRUE,
  referenceDirection = direction
)

Arguments

reference	numeric vector with realizations from the target distribution
data	data frame or matrix with data to be normalized
direction	is data organized per row or column?

Examples

d = sapply(1:20, rnorm(1e4));
dNorm = quantileNormalization(as.vector(d), d)

sboehringer/plausibility documentation built on Dec. 6, 2022, 11:34 a.m.