creole_lines: creole_lines

In schaugf/CREoLE: Consensus Representative Estimation of Lineage Expression

Description

This function calculates consensus trends of gene expression through each lineage established by creole_map

Usage

creole_lines(outDir, origin = NA, subFrac = 0.6, numPts = 10000,
  numIters = 100, GoI = NA)

Arguments

origin	integer value corresponding to the origin cluster of the data. Defaults to putative origin identified in creole_map
subFrac	sub-fraction of cells selected at each iteration of expression trend estimation, given as percent. Defaults to 0.66
numPts	number of points or resolution of final output trend estimation. Defaults to 10000
numIters	number of estimation iterations. Defaults to 100
GoI	List of Genes of Interest. 'NA' results in all genes, which could significantly increase processing time

Examples

creole_lines()

schaugf/CREoLE documentation built on May 29, 2019, 3:26 p.m.