Man pages for schw4b/DGM
Dynamical Graphical Models

binom.nettestPerformes a binomial test with FDR correction for network...
centerMean centers timeseries in a 2D array timeseries x nodes,...
corTsCorrelation of time series.
dgm.groupA group is a list containing restructured data from subejcts...
dlm.lplCalculate the log predictive likelihood for a specified set...
dlmLplCppC++ implementation of the dlm.lpl
dlm.retroCalculate the location and scale parameters for the...
exhaustive.searchA function for an exhaustive search, calculates the optimum...
getAdjacencyGet adjacency and associated likelihoods (LPL) and disount...
getIncompleteNodesChecks results and returns job number for incomplete nodes.
getModelGet specific parent model from all models.
getWinnerGet winner network by maximazing log predictive likelihood...
gplotMatPlots network as adjacency matrix.
mergeModelsMerges forward and backward model store.
model.generatorA function to generate all the possible models.
mytsNetwork simulation data.
nodeRuns exhaustive search on a single node and saves results in...
patelPatel.
patel.groupA group is a list containing restructured data from subejcts...
perfPerformance of estimates, such as sensitivity, specificity,...
priors.specSpecify the priors. Without inputs, defaults will be used.
pruningGet pruned adjacency network.
rand.testRandomization test for Patel's kappa. Creates a distribution...
read.subjectReads single subject's network from txt files.
reshapeTsReshapes a 2D concatenated time series into 3D according to...
rmdiagRemoves diagnoal from matrix.
rmnaRemoves NAs from matrix.
rmRecipLowRemoves reciprocal connections in the lower diagnoal of the...
scaleTsScaling data. Zero centers and scales the nodes (SD=1).
stepwise.backwardStepise backward non-exhaustive greedy search, calculates the...
stepwise.combineStepise combine
stepwise.forwardStepise forward non-exhaustive greedy search, calculates the...
subjectEstimate subject's full network: runs exhaustive search on...
symmetricTurns asymetric network into an symmetric network. Helper...
utestdataResults from v.1.0 for unit tests.
schw4b/DGM documentation built on May 7, 2019, 3:16 p.m.