choose_alignment: choose_alignment

In schyen/isolationWorkflow: Workflow for building strain libraries during isolation experiments

Description

function to choose sample based on alignment using DECIPHER Alignseqs

Usage

choose_alignment(lib_path, lib_file, blast_file, fasta_path, fastatoalign)

Arguments

lib_path	string. path. location of strain library
lib_file	string. file name. strain library file
blast_file	string. file name. csv file of blast results
fasta_path	string. path. location of fasta file(s) that need to be aligned
fastatoalign	string or vector of strings. fasta files to be aligned.

Value

updates strain library with strains selected

schyen/isolationWorkflow documentation built on May 24, 2019, 2:03 a.m.